{ "type": "genome", "identifier": "GCA_937973845.1", "organism": "uncultured Mycoplasma sp.", "title": "uncultured Mycoplasma sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937973845.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14084471", "wgs_master": "CALJJT000000000.1", "refseq_category": "na", "taxid": "167967", "species_taxid": "167967", "organism_name": "uncultured Mycoplasma sp.", "infraspecific_name": "", "isolate": "ERR525959_bin.3_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR525959_bin.3_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/973/845/GCA_937973845.1_ERR525959_bin.3_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Mycoplasma sp." ], "sample_taxid": [ "167967" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "0.383 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1396231", "Number of Sequences": "105", "Longest Sequences (bp)": "53944", "N50 (bp)": "18283", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.7", "Number of CDSs": "1347", "Average Protein Length": "297.0", "Coding Ratio (%)": "86.0", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000433455.1", "gtdb_species": "s__CAG-877 sp000433455", "ani": 97.7206, "matched_fragments": 357, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_900768815.1", "gtdb_species": "s__CAG-877 sp900768815", "ani": 93.6295, "matched_fragments": 343, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900753325.1", "gtdb_species": "s__CAG-877 sp900753325", "ani": 82.1338, "matched_fragments": 215, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "99.65", "mean_intra_species_af": "0.68", "min_intra_species_af": "0.68", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017409785.1", "gtdb_species": "s__CAG-877 sp017409785", "ani": 79.5671, "matched_fragments": 135, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017622175.1", "gtdb_species": "s__CAG-877 sp017622175", "ani": 79.2055, "matched_fragments": 139, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016293205.1", "gtdb_species": "s__CAG-877 sp016293205", "ani": 78.9189, "matched_fragments": 120, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-877", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017519965.1", "gtdb_species": "s__RUG14891 sp017519965", "ani": 78.5507, "matched_fragments": 96, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG14891", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902768065.1", "gtdb_species": "s__UBA3789 sp902768065", "ani": 78.065, "matched_fragments": 86, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UBA3789", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902767005.1", "gtdb_species": "s__RUG11224 sp902767005", "ani": 77.9463, "matched_fragments": 83, "total_fragments": 415, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG11224", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.618, "cell_length": -0.458, "doubling_h": 0.566, "growth_tmp": 36.578, "optimum_tmp": 35.987, "optimum_ph": 7.6, "genome_size": 851576.622, "gc_content": 28.861, "coding_genes": 692.076, "rRNA16S_genes": 1.563, "tRNA_genes": 31.44, "gram_stain": 0.009, "sporulation": 0.0, "motility": 0.156, "range_salinity": 0.09, "facultative_respiration": 0.622, "anaerobic_respiration": 0.044, "aerobic_respiration": 0.333, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.023, "coccus_cell_shape": 0.93, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.046, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__CAG-877", "s__CAG-877 sp000433455" ], "_genome_taxon": [ "uncultured", "Mycoplasma", "sp.", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__CAG-877", "s__CAG-877 sp000433455", "Bacteria", "Bacillota", "I", "Bacilli", "A", "RF39", "UBA660", "CAG-877", "CAG-877", "sp000433455" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }