{ "type": "genome", "identifier": "GCA_937975995.1", "organism": "uncultured Methanobrevibacter sp.", "title": "uncultured Methanobrevibacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937975995.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14083287", "wgs_master": "CALJSL000000000.1", "refseq_category": "na", "taxid": "253161", "species_taxid": "253161", "organism_name": "uncultured Methanobrevibacter sp.", "infraspecific_name": "", "isolate": "ERR1018185_bin.97_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ERR1018185_bin.97_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/975/995/GCA_937975995.1_ERR1018185_bin.97_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Methanobrevibacter sp." ], "sample_taxid": [ "253161" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.806 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 5.56, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2885696", "Number of Sequences": "145", "Longest Sequences (bp)": "175350", "N50 (bp)": "39163", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.4", "Number of CDSs": "3088", "Average Protein Length": "262.1", "Coding Ratio (%)": "84.2", "Number of rRNAs": "2", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanobrevibacter woesei", "strain": "strain=DSM 11979", "accession": "GCA_003111605.1", "taxid": 190976, "species_taxid": 190976, "relation_to_type": "type", "validated": true, "ani": 79.4997, "matched_fragments": 225, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter smithii", "strain": "strain=ATCC 35061; PS; DSMZ 861", "accession": "GCA_000016525.1", "taxid": 2173, "species_taxid": 2173, "relation_to_type": "type", "validated": true, "ani": 78.9408, "matched_fragments": 208, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter oralis", "strain": "strain=DSM 7256", "accession": "GCA_001639275.1", "taxid": 66851, "species_taxid": 66851, "relation_to_type": "type", "validated": true, "ani": 78.7395, "matched_fragments": 166, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter gottschalkii", "strain": "strain=DSM 11977", "accession": "GCA_003814835.1", "taxid": 190974, "species_taxid": 190974, "relation_to_type": "type", "validated": true, "ani": 78.6236, "matched_fragments": 166, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter olleyae", "strain": "strain=DSM 16632", "accession": "GCA_900114585.1", "taxid": 294671, "species_taxid": 294671, "relation_to_type": "type", "validated": true, "ani": 77.3194, "matched_fragments": 116, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter arboriphilus", "strain": "strain=JCM 13429", "accession": "GCA_001316345.1", "taxid": 39441, "species_taxid": 39441, "relation_to_type": "type", "validated": true, "ani": 76.4804, "matched_fragments": 84, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter filiformis", "strain": "strain=DSM 11501", "accession": "GCA_001639265.1", "taxid": 55758, "species_taxid": 55758, "relation_to_type": "type", "validated": true, "ani": 76.4694, "matched_fragments": 87, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter arboriphilus", "strain": "strain=DH1", "accession": "GCA_002072215.1", "taxid": 39441, "species_taxid": 39441, "relation_to_type": "type", "validated": true, "ani": 76.4508, "matched_fragments": 109, "total_fragments": 892, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 5.56, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900766745.1", "gtdb_species": "s__Methanobrevibacter_A sp900766745", "ani": 97.7273, "matched_fragments": 479, "total_fragments": 892, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "97.55", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_002496065.1", "gtdb_species": "s__Methanobrevibacter_A sp002496065", "ani": 81.7551, "matched_fragments": 248, "total_fragments": 892, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003111605.1", "gtdb_species": "s__Methanobrevibacter_A woesei", "ani": 79.5215, "matched_fragments": 224, "total_fragments": 892, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.82", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002252585.1", "gtdb_species": "s__Methanobrevibacter_A smithii_A", "ani": 79.1951, "matched_fragments": 199, "total_fragments": 892, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_003814835.1", "gtdb_species": "s__Methanobrevibacter_A gottschalkii", "ani": 78.6469, "matched_fragments": 165, "total_fragments": 892, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "98.93", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902771225.1", "gtdb_species": "s__Methanobrevibacter_A sp900319535", "ani": 78.5839, "matched_fragments": 160, "total_fragments": 892, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", 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sp900766745", "Archaea", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "A", "Methanobrevibacter", "A", "sp900766745" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }