{ "type": "genome", "identifier": "GCA_937980085.1", "organism": "uncultured Collinsella sp.", "title": "uncultured Collinsella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937980085.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085371", "wgs_master": "CALJQO000000000.1", "refseq_category": "na", "taxid": "165190", "species_taxid": "165190", "organism_name": "uncultured Collinsella sp.", "infraspecific_name": "", "isolate": "ERR912141_bin.55_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ERR912141_bin.55_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/980/085/GCA_937980085.1_ERR912141_bin.55_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Collinsella sp." ], "sample_taxid": [ "165190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.645 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 9.75, "strain_heterogeneity": 16.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2256451", "Number of Sequences": "289", "Longest Sequences (bp)": "46655", "N50 (bp)": "15473", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "1845", "Average Protein Length": "310.3", "Coding Ratio (%)": "76.1", "Number of rRNAs": "2", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Collinsella aerofaciens", "strain": "strain=JCM 10188", "accession": "GCA_010509075.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 94.7109, "matched_fragments": 522, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=NCTC11838", "accession": "GCA_900461335.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 94.7029, "matched_fragments": 521, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 94.6784, "matched_fragments": 522, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella bouchesdurhonensis", "strain": "strain=Marseille-P3296", "accession": "GCA_900155365.1", "taxid": 1907654, "species_taxid": 1907654, "relation_to_type": "type", "validated": true, "ani": 80.268, "matched_fragments": 186, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_000156215.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 79.6444, "matched_fragments": 217, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 79.6058, "matched_fragments": 218, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, "ani": 79.4392, "matched_fragments": 206, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella intestinalis", "strain": "strain=DSM 13280", "accession": "GCA_000156175.1", "taxid": 147207, "species_taxid": 147207, "relation_to_type": "suspected-type", "validated": true, "ani": 79.4062, "matched_fragments": 192, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella tanakaei", "strain": "strain=YIT 12063", "accession": "GCA_000225705.1", "taxid": 626935, "species_taxid": 626935, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2191, "matched_fragments": 200, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella provencensis", "strain": "strain=Marseille-P3740", "accession": "GCA_900199705.1", "taxid": 1937461, "species_taxid": 1937461, "relation_to_type": "type", "validated": true, "ani": 79.1013, "matched_fragments": 159, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma burkinafasonensis", "strain": "strain=Marseille-P9525", "accession": "GCA_902150035.1", "taxid": 2590867, "species_taxid": 2590867, "relation_to_type": "type", "validated": true, "ani": 79.0888, "matched_fragments": 199, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia hattorii", "strain": "strain=8CFCBH1", "accession": "GCA_011405655.1", "taxid": 2707299, "species_taxid": 2707299, "relation_to_type": "type", "validated": true, "ani": 78.9807, "matched_fragments": 55, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma timonensis", "strain": "strain=GD5", "accession": "GCA_000321165.1", "taxid": 1232436, "species_taxid": 1232436, "relation_to_type": "type", "validated": true, "ani": 78.7501, "matched_fragments": 178, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=JCM 14811", "accession": "GCA_016865385.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 77.8977, "matched_fragments": 59, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=JCM 14811", "accession": "GCA_003428485.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 77.8912, "matched_fragments": 59, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_024171685.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 77.6354, "matched_fragments": 60, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Adlercreutzia equolifaciens subsp. celatus", "strain": "strain=DSM 18785", "accession": "GCA_003726015.1", "taxid": 394340, "species_taxid": 446660, "relation_to_type": "type", "validated": true, "ani": 77.6305, "matched_fragments": 60, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Senegalimassilia anaerobia", "strain": "strain=type strain: JC110", "accession": "GCA_000236865.1", "taxid": 1473216, "species_taxid": 1473216, "relation_to_type": "type", "validated": true, "ani": 77.5188, "matched_fragments": 74, "total_fragments": 599, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 9.75, "strain_heterogeneity": 16.67 }, "gtdb_result": [ { "accession": "GCA_900547855.1", "gtdb_species": "s__Collinsella sp900547855", "ani": 96.1379, "matched_fragments": 421, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.1901, "mean_intra_species_ani": "95.33", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_019041915.1", "gtdb_species": "s__Collinsella sp019041915", "ani": 95.0314, "matched_fragments": 508, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.145, "mean_intra_species_ani": "96.63", "min_intra_species_ani": "95.48", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_015670795.1", "gtdb_species": "s__Collinsella aerofaciens_Q", "ani": 94.8984, "matched_fragments": 511, "total_fragments": 599, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Coriobacteriaceae;g__Collinsella", "ani_circumscription_radius": 95.1438, "mean_intra_species_ani": "95.30", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900541125.1", "gtdb_species": "s__Collinsella sp900541125", "ani": 94.7889, "matched_fragments": 506, 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