{
    "type": "genome",
    "identifier": "GCA_937980405.1",
    "organism": "uncultured Peptoniphilus sp.",
    "title": "uncultured Peptoniphilus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_937980405.1",
        "bioproject": "PRJEB51075",
        "biosample": "SAMEA14085463",
        "wgs_master": "CALJQC000000000.1",
        "refseq_category": "na",
        "taxid": "254354",
        "species_taxid": "254354",
        "organism_name": "uncultured Peptoniphilus sp.",
        "infraspecific_name": "",
        "isolate": "SRR12395647_bin.57_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/09",
        "asm_name": "SRR12395647_bin.57_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/980/405/GCA_937980405.1_SRR12395647_bin.57_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-09",
    "dateModified": "2023-01-09",
    "datePublished": "2023-01-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Peptoniphilus sp."
        ],
        "sample_taxid": [
            "254354"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "0.389 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 50.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1389669",
        "Number of Sequences": "142",
        "Longest Sequences (bp)": "76569",
        "N50 (bp)": "17271",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.4",
        "Number of CDSs": "1242",
        "Average Protein Length": "306.5",
        "Coding Ratio (%)": "82.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "14",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Peptoniphilus grossensis",
                "strain": "strain=ph5",
                "accession": "GCA_000311825.1",
                "taxid": 1465756,
                "species_taxid": 1465756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.7152,
                "matched_fragments": 376,
                "total_fragments": 396,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Peptoniphilus gorbachii",
                "strain": "strain=DSM 21461",
                "accession": "GCA_016908115.1",
                "taxid": 411567,
                "species_taxid": 411567,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.9125,
                "matched_fragments": 350,
                "total_fragments": 396,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus senegalensis",
                "strain": "strain=type strain: JC140",
                "accession": "GCA_000321025.1",
                "taxid": 1465757,
                "species_taxid": 1465757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1907,
                "matched_fragments": 342,
                "total_fragments": 396,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus phoceensis",
                "strain": "strain=SIT15",
                "accession": "GCA_001517665.2",
                "taxid": 1720298,
                "species_taxid": 1720298,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7593,
                "matched_fragments": 300,
                "total_fragments": 396,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus timonensis",
                "strain": "strain=JC401",
                "accession": "GCA_000312025.1",
                "taxid": 1268254,
                "species_taxid": 1268254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5406,
                "matched_fragments": 300,
                "total_fragments": 396,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus harei",
                "strain": "strain=FDAARGOS_1136",
                "accession": "GCA_016726485.1",
                "taxid": 54005,
                "species_taxid": 54005,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 82.0423,
                "matched_fragments": 307,
                "total_fragments": 396,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus harei",
                "strain": "strain=NCTC13076",
                "accession": "GCA_900454685.1",
                "taxid": 54005,
                "species_taxid": 54005,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.9682,
                "matched_fragments": 313,
                "total_fragments": 396,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 50.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000311825.1",
                "gtdb_species": "s__Peptoniphilus_A grossensis",
                "ani": 96.7152,
                "matched_fragments": 376,
                "total_fragments": 396,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.39",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016908115.1",
                "gtdb_species": "s__Peptoniphilus_A gorbachii",
                "ani": 88.9125,
                "matched_fragments": 350,
                "total_fragments": 396,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.70",
                "min_intra_species_ani": "96.17",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000321025.1",
                "gtdb_species": "s__Peptoniphilus_A senegalensis",
                "ani": 88.1907,
                "matched_fragments": 342,
                "total_fragments": 396,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.73",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_012976305.1",
                "gtdb_species": "s__Peptoniphilus_A faecalis",
                "ani": 84.0268,
                "matched_fragments": 320,
                "total_fragments": 396,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.47",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001517665.2",
                "gtdb_species": "s__Peptoniphilus_A phoceensis",
                "ani": 82.7593,
                "matched_fragments": 300,
                "total_fragments": 396,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 96.7724,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000312025.1",
                "gtdb_species": "s__Peptoniphilus_A timonensis",
                "ani": 82.5272,
                "matched_fragments": 301,
                "total_fragments": 396,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 96.7724,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900454685.1",
                "gtdb_species": "s__Peptoniphilus_A harei",
                "ani": 81.9607,
                "matched_fragments": 312,
                "total_fragments": 396,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.43",
                "min_intra_species_ani": "96.58",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.228,
        "cell_length": -0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 1957597.416,
        "gc_content": 31.795,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.333,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Peptoniphilaceae",
        "g__Peptoniphilus_A",
        "s__Peptoniphilus_A grossensis"
    ],
    "_genome_taxon": [
        "uncultured",
        "Peptoniphilus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Peptoniphilaceae",
        "g__Peptoniphilus_A",
        "s__Peptoniphilus_A grossensis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Tissierellales",
        "Peptoniphilaceae",
        "Peptoniphilus",
        "A",
        "Peptoniphilus",
        "A",
        "grossensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}