{ "type": "genome", "identifier": "GCA_937982575.1", "organism": "uncultured Arcobacter sp.", "title": "uncultured Arcobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937982575.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082173", "wgs_master": "CALJLR000000000.1", "refseq_category": "na", "taxid": "165434", "species_taxid": "165434", "organism_name": "uncultured Arcobacter sp.", "infraspecific_name": "", "isolate": "SRR5894287_bin.36_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR5894287_bin.36_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/982/575/GCA_937982575.1_SRR5894287_bin.36_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Arcobacter sp." ], "sample_taxid": [ "165434" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.803 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2945151", "Number of Sequences": "29", "Longest Sequences (bp)": "478065", "N50 (bp)": "261190", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.1", "Number of CDSs": "3071", "Average Protein Length": "297.0", "Coding Ratio (%)": "92.9", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcobacter nitrofigilis", "strain": "strain=DSM 7299", "accession": "GCA_000092245.1", "taxid": 28199, "species_taxid": 28199, "relation_to_type": "type", "validated": true, "ani": 84.8333, "matched_fragments": 666, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=LMG 26156", "accession": "GCA_013201665.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 79.4483, "matched_fragments": 391, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter ellisii", "strain": "strain=LMG 26155", "accession": "GCA_003544915.1", "taxid": 913109, "species_taxid": 913109, "relation_to_type": "type", "validated": true, "ani": 79.3454, "matched_fragments": 386, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=CECT7836", "accession": "GCA_004023405.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 79.3251, "matched_fragments": 394, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=LMG 26638", "accession": "GCA_004214795.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 79.2798, "matched_fragments": 363, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=CGMCC 1.11011", "accession": "GCA_014636355.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 79.2038, "matched_fragments": 364, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT7833", "accession": "GCA_004023465.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 79.1514, "matched_fragments": 365, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Halarcobacter] arenosus", "strain": "strain=CAU 1517", "accession": "GCA_005771535.1", "taxid": 2576037, "species_taxid": 2576037, "relation_to_type": "type", "validated": true, "ani": 79.1235, "matched_fragments": 390, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT 7833", "accession": "GCA_003544815.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 79.0384, "matched_fragments": 370, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=CECT 8441", "accession": "GCA_004116565.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 79.0082, "matched_fragments": 353, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=LMG 26154", "accession": "GCA_003346815.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 79.0076, "matched_fragments": 377, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter bivalviorum", "strain": "strain=CECT 7835", "accession": "GCA_004116675.1", "taxid": 663364, "species_taxid": 663364, "relation_to_type": "type", "validated": true, "ani": 78.9995, "matched_fragments": 388, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter caeni", "strain": "strain=RW17-10", "accession": "GCA_003063245.1", "taxid": 1912877, "species_taxid": 1912877, "relation_to_type": "type", "validated": true, "ani": 78.9883, "matched_fragments": 335, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=LMG 25694", "accession": "GCA_013201725.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 78.9445, "matched_fragments": 393, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=CECT 7697", "accession": "GCA_004115775.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 78.8984, "matched_fragments": 392, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter aquimarinus", "strain": "strain=CECT 8442", "accession": "GCA_004115795.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 78.8692, "matched_fragments": 358, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halarcobacter ebronensis", "strain": "strain=LMG 27922", "accession": "GCA_013201825.1", "taxid": 1462615, "species_taxid": 1462615, "relation_to_type": "type", "validated": true, "ani": 78.841, "matched_fragments": 360, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter aquimarinus", "strain": "strain=W63", "accession": "GCA_013177635.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 78.8145, "matched_fragments": 375, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter canalis", "strain": "strain=F138-33", "accession": "GCA_002723485.1", "taxid": 1912871, "species_taxid": 1912871, "relation_to_type": "type", "validated": true, "ani": 78.7732, "matched_fragments": 369, "total_fragments": 965, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002869535.1", "gtdb_species": "s__Arcobacter sp002869535", "ani": 99.9398, "matched_fragments": 878, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_004116465.1", "gtdb_species": "s__Arcobacter sp004116465", "ani": 85.0441, "matched_fragments": 642, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000092245.1", "gtdb_species": "s__Arcobacter nitrofigilis", "ani": 84.8426, "matched_fragments": 665, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Arcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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"GCA_018816105.1", "gtdb_species": "s__Aliarcobacter sp018816105", "ani": 79.144, "matched_fragments": 348, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Aliarcobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009208075.1", "gtdb_species": "s__Poseidonibacter sp009208075", "ani": 79.0757, "matched_fragments": 363, "total_fragments": 965, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003346815.1", 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