{ "type": "genome", "identifier": "GCA_937997355.1", "organism": "uncultured Planctomycetales bacterium", "title": "uncultured Planctomycetales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937997355.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14081743", "wgs_master": "CALKTZ000000000.1", "refseq_category": "na", "taxid": "100371", "species_taxid": "100371", "organism_name": "uncultured Planctomycetales bacterium", "infraspecific_name": "", "isolate": "SRR1955887_bin.73_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR1955887_bin.73_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/997/355/GCA_937997355.1_SRR1955887_bin.73_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Planctomycetales bacterium" ], "sample_taxid": [ "100371" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa" ], "sample_host_location_id": [], "data_size": "1.733 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 84.14, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6140454", "Number of Sequences": "1293", "Longest Sequences (bp)": "28290", "N50 (bp)": "5828", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.0", "Number of CDSs": "4080", "Average Protein Length": "302.8", "Coding Ratio (%)": "60.4", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paludisphaera borealis", "strain": "strain=PX4", "accession": "GCA_001956985.1", "taxid": 1387353, "species_taxid": 1387353, "relation_to_type": "type", "validated": true, "ani": 77.4458, "matched_fragments": 353, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera soli", "strain": "strain=JC670", "accession": "GCA_011064595.1", "taxid": 2712865, "species_taxid": 2712865, "relation_to_type": "type", "validated": true, "ani": 77.3649, "matched_fragments": 326, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisphaera giovannonii", "strain": "strain=OJF2", "accession": "GCA_008087625.1", "taxid": 406548, "species_taxid": 406548, "relation_to_type": "type", "validated": true, "ani": 77.1355, "matched_fragments": 324, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera rhizosphaereae", "strain": "strain=JC665", "accession": "GCA_011065895.1", "taxid": 2711216, "species_taxid": 2711216, "relation_to_type": "type", "validated": true, "ani": 77.0046, "matched_fragments": 261, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Singulisphaera acidiphila", "strain": "strain=DSM 18658", "accession": "GCA_000242455.3", "taxid": 466153, "species_taxid": 466153, "relation_to_type": "type", "validated": true, "ani": 76.529, "matched_fragments": 194, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Singulisphaera acidiphila", "strain": "strain=DSM 18658", "accession": "GCA_000255675.1", "taxid": 466153, "species_taxid": 466153, "relation_to_type": "type", "validated": true, "ani": 76.5252, "matched_fragments": 196, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia sociabilis", "strain": "strain=GM2012", "accession": "GCA_003977685.1", "taxid": 2080755, "species_taxid": 2080755, "relation_to_type": "type", "validated": true, "ani": 76.5244, "matched_fragments": 206, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia marina", "strain": "strain=JC650", "accession": "GCA_009177065.1", "taxid": 2653855, "species_taxid": 2653855, "relation_to_type": "type", "validated": true, "ani": 76.1217, "matched_fragments": 124, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia 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516124, "relation_to_type": "type", "validated": true, "ani": 74.6292, "matched_fragments": 92, "total_fragments": 1354, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 84.14, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001898385.1", "gtdb_species": "s__Paludisphaera sp001898385", "ani": 77.7523, "matched_fragments": 363, "total_fragments": 1354, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Isosphaerales;f__Isosphaeraceae;g__Paludisphaera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001956985.1", "gtdb_species": "s__Paludisphaera borealis", "ani": 77.4481, "matched_fragments": 352, "total_fragments": 1354, "gtdb_taxonomy": 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