{ "type": "genome", "identifier": "GCA_937997795.1", "organism": "uncultured Mollicutes bacterium", "title": "uncultured Mollicutes bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_937997795.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14083900", "wgs_master": "CALLED000000000.1", "refseq_category": "na", "taxid": "220137", "species_taxid": "220137", "organism_name": "uncultured Mollicutes bacterium", "infraspecific_name": "", "isolate": "ERR209456_bin.21_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR209456_bin.21_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/937/997/795/GCA_937997795.1_ERR209456_bin.21_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Mollicutes bacterium" ], "sample_taxid": [ "220137" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "0.394 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1446360", "Number of Sequences": "38", "Longest Sequences (bp)": "179859", "N50 (bp)": "117203", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.5", "Number of CDSs": "1322", "Average Protein Length": "331.4", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900540365.1", "gtdb_species": "s__Onthovivens sp900540365", "ani": 100.0, "matched_fragments": 420, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_900540395.1", "gtdb_species": "s__Onthovivens sp900540395", "ani": 79.1103, "matched_fragments": 93, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.91", "min_intra_species_ani": "95.71", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017694345.1", "gtdb_species": "s__Onthovivens merdipullorum", "ani": 78.386, "matched_fragments": 120, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017477255.1", "gtdb_species": "s__Onthovivens sp017477255", "ani": 78.2826, "matched_fragments": 80, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002438785.1", "gtdb_species": "s__Onthovivens sp002438785", "ani": 78.0015, "matched_fragments": 140, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.24", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905197045.1", "gtdb_species": "s__Onthovivens sp905197045", "ani": 77.7415, "matched_fragments": 94, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900545015.1", "gtdb_species": "s__Onthovivens sp900545015", "ani": 77.2521, "matched_fragments": 90, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016302065.1", "gtdb_species": "s__Onthovivens sp016302065", "ani": 77.0733, "matched_fragments": 73, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002451465.1", "gtdb_species": "s__Onthovivens sp002451465", "ani": 76.8945, "matched_fragments": 79, "total_fragments": 463, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RFN20;f__CAG-826;g__Onthovivens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.55", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.89", "num_clustered_genomes": 6, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RFN20", "f__CAG-826", "g__Onthovivens", "s__Onthovivens sp900540365" ], "_genome_taxon": [ "uncultured", "Mollicutes", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RFN20", "f__CAG-826", "g__Onthovivens", "s__Onthovivens sp900540365", "Bacteria", "Bacillota", "I", "Bacilli", "A", "RFN20", "CAG-826", "Onthovivens", "Onthovivens", "sp900540365" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }