{ "type": "genome", "identifier": "GCA_938002045.1", "organism": "Tenacibaculum soleae", "title": "Tenacibaculum soleae", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938002045.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14073481", "wgs_master": "CALLBA000000000.1", "refseq_category": "na", "taxid": "447689", "species_taxid": "447689", "organism_name": "Tenacibaculum soleae", "infraspecific_name": "", "isolate": "L4_Bin_Bin_54_sub_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/25", "asm_name": "L4_Bin_Bin_54_sub_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/002/045/GCA_938002045.1_L4_Bin_Bin_54_sub_1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-25", "dateModified": "2023-01-25", "datePublished": "2023-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Tenacibaculum soleae" ], "sample_taxid": [ "447689" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.698 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2530960", "Number of Sequences": "35", "Longest Sequences (bp)": "387375", "N50 (bp)": "270183", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.1", "Number of CDSs": "2352", "Average Protein Length": "321.4", "Coding Ratio (%)": "89.6", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 86.1566, "matched_fragments": 596, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum ovolyticum", "strain": "strain=DSM 18103", "accession": "GCA_000430545.1", "taxid": 104270, "species_taxid": 104270, "relation_to_type": "type", "validated": true, "ani": 82.6506, "matched_fragments": 542, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum finnmarkense", "strain": "strain=TNO010", "accession": "GCA_900239495.1", "taxid": 2781243, "species_taxid": 2781243, "relation_to_type": "type", "validated": true, "ani": 80.9936, "matched_fragments": 431, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum pelagium", "strain": "strain=S7007", "accession": "GCA_014062345.1", "taxid": 2759527, "species_taxid": 2759527, "relation_to_type": "type", "validated": true, "ani": 80.9046, "matched_fragments": 457, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aiptasiae", "strain": "strain=a4", "accession": "GCA_008806755.1", "taxid": 426481, "species_taxid": 426481, "relation_to_type": "type", "validated": true, "ani": 80.2833, "matched_fragments": 449, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum discolor", "strain": "strain=DSM 18842", "accession": "GCA_003664185.1", "taxid": 361581, "species_taxid": 361581, "relation_to_type": "type", "validated": true, "ani": 79.663, "matched_fragments": 415, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum mesophilum", "strain": "strain=DSM 13764", "accession": "GCA_009362255.1", "taxid": 104268, "species_taxid": 104268, "relation_to_type": "type", "validated": true, "ani": 79.5537, "matched_fragments": 400, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum gallaicum", "strain": "strain=DSM 18841", "accession": "GCA_003387615.1", "taxid": 561505, "species_taxid": 561505, "relation_to_type": "type", "validated": true, "ani": 79.5431, "matched_fragments": 423, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum caenipelagi", "strain": "strain=CECT 8283", "accession": "GCA_004363005.1", "taxid": 1325435, "species_taxid": 1325435, "relation_to_type": "type", "validated": true, "ani": 79.5041, "matched_fragments": 390, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum holothuriorum", "strain": "strain=S2-2", "accession": "GCA_002120225.1", "taxid": 1635173, "species_taxid": 1635173, "relation_to_type": "type", "validated": true, "ani": 79.1446, "matched_fragments": 382, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 79.039, "matched_fragments": 341, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 78.8944, "matched_fragments": 351, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 78.1799, "matched_fragments": 292, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 77.6631, "matched_fragments": 271, "total_fragments": 827, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001693415.1", "gtdb_species": "s__Tenacibaculum soleae", "ani": 95.4578, "matched_fragments": 678, "total_fragments": 827, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900239345.1", "gtdb_species": "s__Tenacibaculum dicentrarchi", "ani": 81.1084, "matched_fragments": 437, "total_fragments": 827, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tenacibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.94", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_014062345.1", "gtdb_species": "s__Tenacibaculum pelagium", "ani": 80.9264, "matched_fragments": 455, "total_fragments": 827, "gtdb_taxonomy": 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0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Tenacibaculum", "s__Tenacibaculum soleae" ], "_genome_taxon": [ "Tenacibaculum", "soleae", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Tenacibaculum", "s__Tenacibaculum soleae", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Tenacibaculum", "Tenacibaculum", "soleae" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" }, { "id": "MEO_0000419", "label": "plant body associated" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }