{ "type": "genome", "identifier": "GCA_938002245.1", "organism": "uncultured Chromatiaceae bacterium", "title": "uncultured Chromatiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938002245.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14073286", "wgs_master": "CALLAM000000000.1", "refseq_category": "na", "taxid": "182265", "species_taxid": "182265", "organism_name": "uncultured Chromatiaceae bacterium", "infraspecific_name": "", "isolate": "L1_Bin_METABAT__119_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/25", "asm_name": "L1_Bin_METABAT__119_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/002/245/GCA_938002245.1_L1_Bin_METABAT_119_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-25", "dateModified": "2023-01-25", "datePublished": "2023-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Chromatiaceae bacterium" ], "sample_taxid": [ "182265" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.674 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2379562", "Number of Sequences": "234", "Longest Sequences (bp)": "44649", "N50 (bp)": "13734", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.4", "Number of CDSs": "1982", "Average Protein Length": "317.1", "Coding Ratio (%)": "79.2", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Caldichromatium japonicum", "strain": "strain=No.7", "accession": "GCA_011290485.1", "taxid": 2699430, "species_taxid": 2699430, "relation_to_type": "type", "validated": true, "ani": 80.4797, "matched_fragments": 521, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium tepidum", "strain": "strain=NZ", "accession": "GCA_018409545.1", "taxid": 553982, "species_taxid": 553982, "relation_to_type": "type", "validated": true, "ani": 77.4243, "matched_fragments": 234, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium vinosum", "strain": "strain=DSM 180", "accession": "GCA_000025485.1", "taxid": 1049, "species_taxid": 1049, "relation_to_type": "type", "validated": true, "ani": 77.3088, "matched_fragments": 224, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allochromatium humboldtianum", "strain": "strain=DSM 21881", "accession": "GCA_013385175.1", "taxid": 504901, "species_taxid": 504901, "relation_to_type": "type", "validated": true, "ani": 77.2906, "matched_fragments": 226, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violascens", "strain": "strain=DSM 198", "accession": "GCA_000227745.3", "taxid": 73141, "species_taxid": 73141, "relation_to_type": "type", "validated": true, "ani": 76.587, "matched_fragments": 124, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 76.536, "matched_fragments": 129, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 76.4873, "matched_fragments": 131, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis violacea", "strain": "strain=DSM 207", "accession": "GCA_016583575.1", "taxid": 13725, "species_taxid": 13725, "relation_to_type": "type", "validated": true, "ani": 76.4312, "matched_fragments": 158, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium purpuratum", "strain": "strain=984", "accession": "GCA_000224005.3", "taxid": 37487, "species_taxid": 37487, "relation_to_type": "type", "validated": true, "ani": 76.3214, "matched_fragments": 117, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocystis minor", "strain": "strain=DSM 178", "accession": "GCA_016653465.1", "taxid": 61597, "species_taxid": 61597, "relation_to_type": "type", "validated": true, "ani": 76.3034, "matched_fragments": 126, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa marina", "strain": "strain=5811", "accession": "GCA_000223985.2", "taxid": 244573, "species_taxid": 244573, "relation_to_type": "type", "validated": true, "ani": 76.2759, "matched_fragments": 100, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa roseopersicina", "strain": "strain=DSM 217", "accession": "GCA_900106925.1", "taxid": 1058, "species_taxid": 1058, "relation_to_type": "type", "validated": true, "ani": 76.047, "matched_fragments": 99, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa rosea", "strain": "strain=DSM 235", "accession": "GCA_003634315.1", "taxid": 69360, "species_taxid": 69360, "relation_to_type": "type", "validated": true, "ani": 76.0196, "matched_fragments": 109, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiocapsa bogorovii", "strain": "strain=BBS", "accession": "GCA_021228795.1", "taxid": 521689, "species_taxid": 521689, "relation_to_type": "type", "validated": true, "ani": 75.9784, "matched_fragments": 95, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioflavicoccus mobilis", "strain": "strain=8321", "accession": "GCA_000327045.1", "taxid": 80679, "species_taxid": 80679, "relation_to_type": "type", "validated": true, "ani": 75.8649, "matched_fragments": 82, "total_fragments": 673, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011290485.1", "gtdb_species": "s__Caldichromatium japonicum", "ani": 80.4797, "matched_fragments": 521, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Caldichromatium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009664085.1", "gtdb_species": "s__Thermochromatium tepidum", "ani": 77.4568, "matched_fragments": 262, "total_fragments": 673, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Chromatiaceae;g__Thermochromatium", "ani_circumscription_radius": 95.0, 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