{ "type": "genome", "identifier": "GCA_938002845.1", "organism": "uncultured Campylobacter sp.", "title": "uncultured Campylobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938002845.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14084545", "wgs_master": "CALKZP000000000.1", "refseq_category": "na", "taxid": "218934", "species_taxid": "218934", "organism_name": "uncultured Campylobacter sp.", "infraspecific_name": "", "isolate": "ERR589365_bin.31_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ERR589365_bin.31_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/002/845/GCA_938002845.1_ERR589365_bin.31_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Campylobacter sp." ], "sample_taxid": [ "218934" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.623 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2218617", "Number of Sequences": "60", "Longest Sequences (bp)": "169385", "N50 (bp)": "63192", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.0", "Number of CDSs": "2035", "Average Protein Length": "295.5", "Coding Ratio (%)": "81.3", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter gracilis", "strain": "strain=FDAARGOS_1548", "accession": "GCA_020736185.1", "taxid": 824, "species_taxid": 824, "relation_to_type": "type", "validated": true, "ani": 93.6755, "matched_fragments": 642, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter gracilis", "strain": "strain=ATCC 33236", "accession": "GCA_001190745.1", "taxid": 824, "species_taxid": 824, "relation_to_type": "type", "validated": true, "ani": 93.6188, "matched_fragments": 635, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter gracilis", "strain": "strain=NCTC12738", "accession": "GCA_900446335.1", "taxid": 824, "species_taxid": 824, "relation_to_type": "type", "validated": true, "ani": 93.6002, "matched_fragments": 636, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter massiliensis", "strain": "strain=Marseille-Q3452", "accession": "GCA_014253065.1", "taxid": 2762557, "species_taxid": 2762557, "relation_to_type": "type", "validated": true, "ani": 80.4121, "matched_fragments": 166, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter rectus", "strain": "strain=ATCC 33238", "accession": "GCA_004803795.1", "taxid": 203, "species_taxid": 203, "relation_to_type": "type", "validated": true, "ani": 80.3694, "matched_fragments": 180, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter rectus", "strain": "strain=FDAARGOS_1549", "accession": "GCA_020736205.1", "taxid": 203, "species_taxid": 203, "relation_to_type": "type", "validated": true, "ani": 80.3627, "matched_fragments": 175, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter showae", "strain": "strain=ATCC 51146", "accession": "GCA_004803815.1", "taxid": 204, "species_taxid": 204, "relation_to_type": "suspected-type", "validated": true, "ani": 80.138, "matched_fragments": 176, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter curvus", "strain": "strain=FDAARGOS_1547", "accession": "GCA_020736225.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7229, "matched_fragments": 96, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter curvus", "strain": "strain=DSM 6644", "accession": "GCA_000376325.1", "taxid": 200, "species_taxid": 200, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6441, "matched_fragments": 97, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900539505.1", "gtdb_species": "s__Campylobacter_B sp900539505", "ani": 94.1462, "matched_fragments": 579, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905373215.1", "gtdb_species": "s__Campylobacter_B sp905373215", "ani": 93.8788, "matched_fragments": 618, 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