{ "type": "genome", "identifier": "GCA_938005385.1", "organism": "uncultured Slackia sp.", "title": "uncultured Slackia sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938005385.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085224", "wgs_master": "CALLNK000000000.1", "refseq_category": "na", "taxid": "665903", "species_taxid": "665903", "organism_name": "uncultured Slackia sp.", "infraspecific_name": "", "isolate": "ERR912019_bin.72_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ERR912019_bin.72_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/005/385/GCA_938005385.1_ERR912019_bin.72_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Slackia sp." ], "sample_taxid": [ "665903" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.615 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.26, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2149945", "Number of Sequences": "104", "Longest Sequences (bp)": "142714", "N50 (bp)": "38346", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.6", "Number of CDSs": "1832", "Average Protein Length": "321.7", "Coding Ratio (%)": "82.2", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Slackia piriformis", "strain": "strain=YIT 12062", "accession": "GCA_000296445.1", "taxid": 626934, "species_taxid": 626934, "relation_to_type": "type", "validated": true, "ani": 91.0788, "matched_fragments": 571, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia faecicanis", "strain": "strain=DSM 17537", "accession": "GCA_003725295.1", "taxid": 255723, "species_taxid": 255723, "relation_to_type": "type", "validated": true, "ani": 80.7086, "matched_fragments": 310, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia equolifaciens", "strain": "strain=DSM 24851", "accession": "GCA_003725995.1", "taxid": 498718, "species_taxid": 498718, "relation_to_type": "type", "validated": true, "ani": 78.3591, "matched_fragments": 182, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_003725955.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 78.292, "matched_fragments": 152, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia isoflavoniconvertens", "strain": "strain=DSM 22006", "accession": "GCA_014192995.1", "taxid": 572010, "species_taxid": 572010, "relation_to_type": "type", "validated": true, "ani": 78.2517, "matched_fragments": 146, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Senegalimassilia anaerobia", "strain": "strain=type strain: JC110", "accession": "GCA_000236865.1", "taxid": 1473216, "species_taxid": 1473216, "relation_to_type": "type", "validated": true, "ani": 78.0938, "matched_fragments": 123, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia heliotrinireducens", "strain": "strain=NCTC11029", "accession": "GCA_900637575.1", "taxid": 84110, "species_taxid": 84110, "relation_to_type": "type", "validated": true, "ani": 77.6858, "matched_fragments": 111, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 77.6818, "matched_fragments": 122, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia exigua", "strain": "strain=ATCC 700122", "accession": "GCA_000162875.1", "taxid": 84109, "species_taxid": 84109, "relation_to_type": "type", "validated": true, "ani": 77.6724, "matched_fragments": 104, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Slackia heliotrinireducens", "strain": "strain=DSM 20476", "accession": "GCA_000023885.1", "taxid": 84110, "species_taxid": 84110, "relation_to_type": "type", "validated": true, "ani": 77.6365, "matched_fragments": 112, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 77.5521, "matched_fragments": 52, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella timonensis", "strain": "strain=Marseille-P3135", "accession": "GCA_900184265.1", "taxid": 1871008, "species_taxid": 1871008, "relation_to_type": "type", "validated": true, "ani": 77.3493, "matched_fragments": 130, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003725965.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 77.3261, "matched_fragments": 142, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xiamenia xianingshaonis", "strain": "strain=zg-886", "accession": "GCA_017945865.1", "taxid": 2682776, "species_taxid": 2682776, "relation_to_type": "type", "validated": true, "ani": 77.1215, "matched_fragments": 83, "total_fragments": 666, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xiamenia xianingshaonis", "strain": "strain=zg-886", "accession": "GCA_011392455.1", "taxid": 2682776, 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