{ "type": "genome", "identifier": "GCA_938005605.1", "organism": "uncultured Acidovorax sp.", "title": "uncultured Acidovorax sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938005605.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14081894", "wgs_master": "CALLMX000000000.1", "refseq_category": "na", "taxid": "158751", "species_taxid": "158751", "organism_name": "uncultured Acidovorax sp.", "infraspecific_name": "", "isolate": "SRR3901697_bin.34_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR3901697_bin.34_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/005/605/GCA_938005605.1_SRR3901697_bin.34_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acidovorax sp." ], "sample_taxid": [ "158751" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa" ], "sample_host_location_id": [], "data_size": "1.336 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.35, "contamination": 6.06, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4791105", "Number of Sequences": "385", "Longest Sequences (bp)": "121127", "N50 (bp)": "18032", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "4159", "Average Protein Length": "309.5", "Coding Ratio (%)": "80.6", "Number of rRNAs": "0", "Number of tRNAs": "26", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidovorax delafieldii", "strain": "strain=DSM 64", "accession": "GCA_007993815.1", "taxid": 47920, "species_taxid": 47920, "relation_to_type": "type", "validated": true, "ani": 92.0313, "matched_fragments": 1181, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 87.9504, "matched_fragments": 1124, 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"organism_name": "Acidovorax temperans", "strain": "strain=DSM 7270", "accession": "GCA_006716905.1", "taxid": 80878, "species_taxid": 80878, "relation_to_type": "type", "validated": true, "ani": 83.6975, "matched_fragments": 791, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax carolinensis", "strain": "strain=NA3", "accession": "GCA_002157145.1", "taxid": 553814, "species_taxid": 553814, "relation_to_type": "type", "validated": true, "ani": 83.3154, "matched_fragments": 742, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verminephrobacter eiseniae", "strain": "strain=EF01-2", "accession": "GCA_000015565.1", "taxid": 364317, "species_taxid": 364317, "relation_to_type": "type", "validated": true, "ani": 80.6202, "matched_fragments": 579, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax citrulli", "strain": "strain=DSM 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