{ "type": "genome", "identifier": "GCA_938009165.1", "organism": "uncultured Novosphingobium sp.", "title": "uncultured Novosphingobium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938009165.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14081889", "wgs_master": "CALLIE000000000.1", "refseq_category": "na", "taxid": "292277", "species_taxid": "292277", "organism_name": "uncultured Novosphingobium sp.", "infraspecific_name": "", "isolate": "SRR3901696_bin.21_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "SRR3901696_bin.21_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/009/165/GCA_938009165.1_SRR3901696_bin.21_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Novosphingobium sp." ], "sample_taxid": [ "292277" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa" ], "sample_host_location_id": [], "data_size": "1.532 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5543685", "Number of Sequences": "49", "Longest Sequences (bp)": "865776", "N50 (bp)": "473862", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "4999", "Average Protein Length": "333.3", "Coding Ratio (%)": "90.2", "Number of rRNAs": "0", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium sediminicola", "strain": "strain=DSM 27057", "accession": "GCA_014196525.1", "taxid": 563162, "species_taxid": 563162, "relation_to_type": "type", "validated": true, "ani": 92.2661, "matched_fragments": 1392, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium umbonatum", "strain": "strain=FSY-9", "accession": "GCA_004005905.1", "taxid": 1908524, "species_taxid": 1908524, "relation_to_type": "type", "validated": true, "ani": 82.2657, "matched_fragments": 868, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium ovatum", "strain": "strain=FSY-8", "accession": "GCA_009909235.1", "taxid": 1908523, "species_taxid": 1908523, "relation_to_type": "type", "validated": true, "ani": 81.4025, "matched_fragments": 742, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium rosa", "strain": "strain=NBRC 15208", "accession": "GCA_001598555.1", "taxid": 76978, "species_taxid": 76978, "relation_to_type": "type", "validated": true, "ani": 80.0145, "matched_fragments": 790, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 78.9383, "matched_fragments": 384, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium arvoryzae", "strain": "strain=KCTC 32422", "accession": "GCA_014652615.1", "taxid": 1256514, "species_taxid": 1256514, "relation_to_type": "type", "validated": true, "ani": 78.8528, "matched_fragments": 434, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium capsulatum", "strain": "strain=NBRC 12533", "accession": "GCA_001598375.1", "taxid": 13688, "species_taxid": 13688, "relation_to_type": "type", "validated": true, "ani": 78.7937, "matched_fragments": 574, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 78.54, "matched_fragments": 459, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium flavum", "strain": "strain=NBRC 111647", "accession": "GCA_014230315.1", "taxid": 1778672, "species_taxid": 1778672, "relation_to_type": "type", "validated": true, "ani": 78.5349, "matched_fragments": 442, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium kunmingense", "strain": "strain=CGMCC 1.12274", "accession": "GCA_002813245.1", "taxid": 1211806, "species_taxid": 1211806, "relation_to_type": "type", "validated": true, "ani": 78.4281, "matched_fragments": 326, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium subterraneum", "strain": "strain=DSM 12447", "accession": "GCA_000807925.1", "taxid": 48936, "species_taxid": 48936, "relation_to_type": "type", "validated": true, "ani": 78.4259, "matched_fragments": 385, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium jiangmenense", "strain": "strain=1Y9A", "accession": "GCA_015694345.1", "taxid": 2791981, "species_taxid": 2791981, "relation_to_type": "type", "validated": true, "ani": 78.3689, "matched_fragments": 429, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium lindaniclasticum", "strain": "strain=LE124", "accession": "GCA_000445125.1", "taxid": 1329895, "species_taxid": 1329895, "relation_to_type": "type", "validated": true, "ani": 78.0417, "matched_fragments": 350, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 77.5151, "matched_fragments": 330, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 77.4791, "matched_fragments": 304, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus hydrothermalis", "strain": "strain=JLT1", "accession": "GCA_022378335.1", "taxid": 2867964, "species_taxid": 2867964, "relation_to_type": "type", "validated": true, "ani": 77.4435, "matched_fragments": 273, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceibacterium ferulae", "strain": "strain=SX2RGS8", "accession": "GCA_003660445.1", "taxid": 1854641, "species_taxid": 1854641, "relation_to_type": "type", "validated": true, "ani": 77.4393, "matched_fragments": 295, "total_fragments": 1820, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hankyongella ginsenosidimutans", "strain": "strain=W1-2-3", "accession": "GCA_005144965.1", "taxid": 1763828, 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