{ "type": "genome", "identifier": "GCA_938009245.1", "organism": "Hungatella hathewayi", "title": "Hungatella hathewayi", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938009245.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14083577", "wgs_master": "CALLHW000000000.1", "refseq_category": "na", "taxid": "154046", "species_taxid": "154046", "organism_name": "Hungatella hathewayi", "infraspecific_name": "", "isolate": "ERR1430561_bin.130_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "ERR1430561_bin.130_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/009/245/GCA_938009245.1_ERR1430561_bin.130_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Hungatella hathewayi" ], "sample_taxid": [ "154046" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.582 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.88, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5539034", "Number of Sequences": "169", "Longest Sequences (bp)": "255867", "N50 (bp)": "53984", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.3", "Number of CDSs": "4918", "Average Protein Length": "330.5", "Coding Ratio (%)": "88.0", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_000160095.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6931, "matched_fragments": 289, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 79.5204, "matched_fragments": 312, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium pacaense", "strain": "strain=Marseille-P3100", "accession": "GCA_900566185.1", "taxid": 1917870, "species_taxid": 1917870, "relation_to_type": "type", "validated": true, "ani": 77.6604, "matched_fragments": 89, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 77.2479, "matched_fragments": 217, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_000158075.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 77.2436, "matched_fragments": 267, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_025149125.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 77.2163, "matched_fragments": 270, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella effluvii", "strain": "strain=DSM 24995", "accession": "GCA_003201875.1", "taxid": 1096246, "species_taxid": 1096246, "relation_to_type": "type", "validated": true, "ani": 77.2107, "matched_fragments": 308, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=ATCC 19403", "accession": "GCA_900105615.1", "taxid": 29370, "species_taxid": 29370, "relation_to_type": "type", "validated": true, "ani": 77.12, "matched_fragments": 115, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 77.1, "matched_fragments": 219, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0675, "matched_fragments": 214, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0543, "matched_fragments": 215, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=NCTC507", "accession": "GCA_900461315.1", "taxid": 29370, "species_taxid": 29370, "relation_to_type": "type", "validated": true, "ani": 76.9829, "matched_fragments": 117, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 76.96, "matched_fragments": 202, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora celerecrescens", "strain": "strain=18A", "accession": "GCA_002797975.1", "taxid": 29354, "species_taxid": 29354, "relation_to_type": "type", "validated": true, "ani": 76.8095, "matched_fragments": 119, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium fessum", "strain": "strain=SNUG30386", "accession": "GCA_003024715.1", "taxid": 2126740, "species_taxid": 2126740, "relation_to_type": "type", "validated": true, "ani": 76.7377, "matched_fragments": 84, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium edouardi", "strain": "strain=Marseille-P3397", "accession": "GCA_900240245.1", "taxid": 1926283, "species_taxid": 1926283, "relation_to_type": "type", "validated": true, "ani": 76.5806, "matched_fragments": 95, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora aerotolerans", "strain": "strain=DSM 5434", "accession": "GCA_000687555.1", "taxid": 36832, "species_taxid": 36832, "relation_to_type": "type", "validated": true, "ani": 76.537, "matched_fragments": 106, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diplocloster agilis", "strain": "strain=ASD5720", "accession": "GCA_019042275.1", "taxid": 2850323, "species_taxid": 2850323, "relation_to_type": "type", "validated": true, "ani": 76.3518, "matched_fragments": 72, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 76.052, "matched_fragments": 78, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 75.9537, "matched_fragments": 70, "total_fragments": 1756, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.88, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000235505.1", "gtdb_species": "s__Hungatella_A hathewayi_A", "ani": 99.897, "matched_fragments": 1691, "total_fragments": 1756, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Hungatella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.27", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_000155435.1", "gtdb_species": "s__Enterocloster sp000155435", "ani": 77.782, "matched_fragments": 228, "total_fragments": 1756, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_018380885.1", "gtdb_species": "s__Enterocloster sp900555905", 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1756, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Ventrisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003201875.1", "gtdb_species": "s__Hungatella effluvii", "ani": 77.2286, "matched_fragments": 306, "total_fragments": 1756, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Hungatella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.81", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.78", "min_intra_species_af": "0.75", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_005845265.1", "gtdb_species": "s__Hungatella sp005845265", "ani": 77.2085, "matched_fragments": 284, "total_fragments": 1756, "gtdb_taxonomy": 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