{ "type": "genome", "identifier": "GCA_938014845.1", "organism": "uncultured Luteimonas sp.", "title": "uncultured Luteimonas sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938014845.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082520", "wgs_master": "CALLQO000000000.1", "refseq_category": "na", "taxid": "453144", "species_taxid": "453144", "organism_name": "uncultured Luteimonas sp.", "infraspecific_name": "", "isolate": "SRR6713635_bin.64_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR6713635_bin.64_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/014/845/GCA_938014845.1_SRR6713635_bin.64_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Luteimonas sp." ], "sample_taxid": [ "453144" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.799 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 10.89, "strain_heterogeneity": 12.5, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2898401", "Number of Sequences": "414", "Longest Sequences (bp)": "39591", "N50 (bp)": "10452", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "2409", "Average Protein Length": "310.1", "Coding Ratio (%)": "77.3", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteimonas huabeiensis", "strain": "strain=HB2", "accession": "GCA_000559025.1", "taxid": 1244513, "species_taxid": 1244513, "relation_to_type": "type", "validated": true, "ani": 81.7657, "matched_fragments": 489, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas arsenica", "strain": "strain=26-35", "accession": "GCA_004352825.1", "taxid": 1586242, "species_taxid": 1586242, "relation_to_type": "type", "validated": true, "ani": 81.4124, "matched_fragments": 458, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas terricola", "strain": "strain=CGMCC 1.8985", "accession": "GCA_014645675.1", "taxid": 645597, "species_taxid": 645597, "relation_to_type": "type", "validated": true, "ani": 81.3708, "matched_fragments": 439, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 81.3538, "matched_fragments": 503, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas padinae", "strain": "strain=KCTC 52403", "accession": "GCA_014652935.1", "taxid": 1714359, "species_taxid": 1714359, "relation_to_type": "type", "validated": true, "ani": 81.2114, "matched_fragments": 468, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas terricola", "strain": "strain=BZ92r", "accession": "GCA_004352845.1", "taxid": 645597, "species_taxid": 645597, "relation_to_type": "type", "validated": true, "ani": 81.1958, "matched_fragments": 450, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas colneyensis", "strain": "strain=Sa2BVA3", "accession": "GCA_014836665.1", "taxid": 2762230, "species_taxid": 2762230, "relation_to_type": "type", "validated": true, "ani": 81.1302, "matched_fragments": 467, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 81.0447, "matched_fragments": 466, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 80.8778, "matched_fragments": 478, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 80.7307, "matched_fragments": 423, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 80.6385, "matched_fragments": 417, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aestuarii", "strain": "strain=B9", "accession": "GCA_004357985.1", "taxid": 453837, "species_taxid": 453837, "relation_to_type": "type", "validated": true, "ani": 80.5518, "matched_fragments": 418, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 80.4444, "matched_fragments": 356, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas viscosa", "strain": "strain=XBU10", "accession": "GCA_008244685.1", "taxid": 1132694, "species_taxid": 1132694, "relation_to_type": "type", "validated": true, "ani": 80.414, "matched_fragments": 464, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 80.3429, "matched_fragments": 383, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 80.3423, "matched_fragments": 459, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 80.2931, "matched_fragments": 365, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas sangjuensis", "strain": "strain=DSM 28345", "accession": "GCA_010211755.1", "taxid": 1503750, "species_taxid": 1503750, "relation_to_type": "type", "validated": true, "ani": 80.1785, "matched_fragments": 352, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=DSM 13117", "accession": "GCA_024221815.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 80.036, "matched_fragments": 408, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter ruishenii", "strain": "strain=CGMCC 1.10136", "accession": "GCA_007830115.1", "taxid": 686800, "species_taxid": 686800, "relation_to_type": "type", "validated": true, "ani": 80.0314, "matched_fragments": 389, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas indica", "strain": "strain=PPL560", "accession": "GCA_022669045.1", "taxid": 2912242, "species_taxid": 2912242, "relation_to_type": "type", "validated": true, "ani": 79.9168, "matched_fragments": 420, "total_fragments": 751, "ani_threshold": 95, "status": "below_threshold" }, { 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