{ "type": "genome", "identifier": "GCA_938014895.1", "organism": "Defluviitalea phaphyphila", "title": "Defluviitalea phaphyphila", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938014895.1", "bioproject": "PRJEB51072", "biosample": "SAMEA14082521", "wgs_master": "CALLQN000000000.1", "refseq_category": "na", "taxid": "1473580", "species_taxid": "1473580", "organism_name": "Defluviitalea phaphyphila", "infraspecific_name": "", "isolate": "SRR6713635_bin.66_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR6713635_bin.66_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/014/895/GCA_938014895.1_SRR6713635_bin.66_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Defluviitalea phaphyphila" ], "sample_taxid": [ "1473580" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.566 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2029897", "Number of Sequences": "77", "Longest Sequences (bp)": "143129", "N50 (bp)": "41724", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.3", "Number of CDSs": "1860", "Average Protein Length": "313.8", "Coding Ratio (%)": "86.2", "Number of rRNAs": "1", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Defluviitalea raffinosedens", "strain": "strain=DSM 28090", "accession": "GCA_016908775.1", "taxid": 1450156, "species_taxid": 1450156, "relation_to_type": "type", "validated": true, "ani": 76.3645, "matched_fragments": 57, "total_fragments": 638, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Defluviitalea phaphyphila", "strain": "strain=Alg1", "accession": "GCA_001466305.1", "taxid": 1473580, "species_taxid": 1473580, "relation_to_type": "type", "validated": true, "ani": 76.3211, "matched_fragments": 120, "total_fragments": 638, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natranaerovirga pectinivora", "strain": "strain=DSM 24629", "accession": "GCA_004342165.1", "taxid": 682400, "species_taxid": 682400, "relation_to_type": "type", "validated": true, "ani": 75.9597, "matched_fragments": 54, "total_fragments": 638, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_012524135.1", "gtdb_species": "s__JAAYNZ01 sp012524135", "ani": 99.5653, "matched_fragments": 472, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__JAAYNZ01;g__JAAYNZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_012520595.1", "gtdb_species": "s__JAAYNZ01 sp012520595", "ani": 79.6442, "matched_fragments": 355, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__JAAYNZ01;g__JAAYNZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012799415.1", "gtdb_species": "s__JAAZLH01 sp012799415", "ani": 77.4331, "matched_fragments": 201, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__JAAYNZ01;g__JAAZLH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016908775.1", "gtdb_species": "s__Defluviitalea_A raffinosedens", "ani": 76.3645, "matched_fragments": 57, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Defluviitaleaceae;g__Defluviitalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001466305.1", "gtdb_species": "s__Defluviitalea phaphyphila", "ani": 76.3211, "matched_fragments": 120, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Defluviitaleaceae;g__Defluviitalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012518815.1", "gtdb_species": "s__JAAYML01 sp012518815", "ani": 76.2311, "matched_fragments": 70, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Defluviitaleaceae;g__JAAYML01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012521175.1", "gtdb_species": "s__Defluviitalea_A sp012521175", "ani": 75.8686, "matched_fragments": 53, "total_fragments": 638, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Defluviitaleaceae;g__Defluviitalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.698, "doubling_h": null, "growth_tmp": 50.0, "optimum_tmp": 52.5, "optimum_ph": 7.25, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__JAAYNZ01", "g__JAAYNZ01", "s__JAAYNZ01 sp012524135" ], "_genome_taxon": [ "Defluviitalea", "phaphyphila", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__JAAYNZ01", "g__JAAYNZ01", "s__JAAYNZ01 sp012524135", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "JAAYNZ01", "JAAYNZ01", "JAAYNZ01", "sp012524135" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }