{ "type": "genome", "identifier": "GCA_938016545.1", "organism": "Klebsiella oxytoca", "title": "Klebsiella oxytoca", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938016545.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14084305", "wgs_master": "CALILA000000000.1", "refseq_category": "na", "taxid": "571", "species_taxid": "571", "organism_name": "Klebsiella oxytoca", "infraspecific_name": "", "isolate": "ERR414241_bin.44_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "ERR414241_bin.44_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/016/545/GCA_938016545.1_ERR414241_bin.44_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Klebsiella oxytoca" ], "sample_taxid": [ "571" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "1.674 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5864903", "Number of Sequences": "183", "Longest Sequences (bp)": "299866", "N50 (bp)": "59080", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.8", "Number of CDSs": "5407", "Average Protein Length": "310.7", "Coding Ratio (%)": "85.9", "Number of rRNAs": "0", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klebsiella grimontii", "strain": "strain=06D021", "accession": "GCA_900200035.1", "taxid": 2058152, "species_taxid": 2058152, "relation_to_type": "type", "validated": true, "ani": 99.2047, "matched_fragments": 1721, "total_fragments": 1863, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Klebsiella pasteurii", "strain": "", "accession": "GCA_902158725.1", "taxid": 2587529, "species_taxid": 2587529, "relation_to_type": "type", "validated": true, "ani": 96.0296, "matched_fragments": 1642, "total_fragments": 1863, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=CCUG 66515", "accession": "GCA_009173485.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 93.816, "matched_fragments": 1638, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=DSM 25444", "accession": "GCA_002925905.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 93.7327, "matched_fragments": 1645, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NBRC 105695", "accession": "GCA_001598695.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 91.6123, "matched_fragments": 1557, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella spallanzanii", "strain": "", "accession": "GCA_902158555.1", "taxid": 2587528, "species_taxid": 2587528, "relation_to_type": "type", "validated": true, "ani": 89.2393, "matched_fragments": 1495, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 84.3391, "matched_fragments": 1257, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.8651, "matched_fragments": 914, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8062, "matched_fragments": 864, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.6239, "matched_fragments": 942, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.4336, "matched_fragments": 893, "total_fragments": 1863, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leminorella grimontii", "strain": "strain=JCM 5902", "accession": "GCA_024343555.1", "taxid": 82981, 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