{
    "type": "genome",
    "identifier": "GCA_938018025.1",
    "organism": "Leptotrichia trevisanii",
    "title": "Leptotrichia trevisanii",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_938018025.1",
        "bioproject": "PRJEB51075",
        "biosample": "SAMEA14084769",
        "wgs_master": "CALIIQ000000000.1",
        "refseq_category": "na",
        "taxid": "109328",
        "species_taxid": "109328",
        "organism_name": "Leptotrichia trevisanii",
        "infraspecific_name": "",
        "isolate": "ERR589599_bin.43_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/11",
        "asm_name": "ERR589599_bin.43_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/018/025/GCA_938018025.1_ERR589599_bin.43_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-11",
    "dateModified": "2023-01-11",
    "datePublished": "2023-01-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptotrichia trevisanii"
        ],
        "sample_taxid": [
            "109328"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.835 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 97.35,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3024497",
        "Number of Sequences": "367",
        "Longest Sequences (bp)": "69243",
        "N50 (bp)": "14706",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.4",
        "Number of CDSs": "2778",
        "Average Protein Length": "284.0",
        "Coding Ratio (%)": "78.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Leptotrichia trevisanii",
                "strain": "strain=DSM 22070",
                "accession": "GCA_000482505.1",
                "taxid": 109328,
                "species_taxid": 109328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.7372,
                "matched_fragments": 607,
                "total_fragments": 812,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia massiliensis",
                "strain": "strain=Marseille-P3007",
                "accession": "GCA_900104625.1",
                "taxid": 1852388,
                "species_taxid": 1852388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.9484,
                "matched_fragments": 600,
                "total_fragments": 812,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia hofstadii",
                "strain": "strain=JCM16775",
                "accession": "GCA_007990525.1",
                "taxid": 157688,
                "species_taxid": 157688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6532,
                "matched_fragments": 589,
                "total_fragments": 812,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia hofstadii",
                "strain": "strain=DSM 21651",
                "accession": "GCA_000428965.1",
                "taxid": 157688,
                "species_taxid": 157688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.6297,
                "matched_fragments": 587,
                "total_fragments": 812,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia buccalis",
                "strain": "strain=DSM 1135",
                "accession": "GCA_000023905.1",
                "taxid": 40542,
                "species_taxid": 40542,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0019,
                "matched_fragments": 534,
                "total_fragments": 812,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia wadei",
                "strain": "strain=DSM 19758",
                "accession": "GCA_000373345.1",
                "taxid": 157687,
                "species_taxid": 157687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6318,
                "matched_fragments": 486,
                "total_fragments": 812,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 97.35,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013394795.1",
                "gtdb_species": "s__Leptotrichia sp013394795",
                "ani": 96.4821,
                "matched_fragments": 641,
                "total_fragments": 812,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000482505.1",
                "gtdb_species": "s__Leptotrichia trevisanii",
                "ani": 91.7488,
                "matched_fragments": 607,
                "total_fragments": 812,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.58",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900104625.1",
                "gtdb_species": "s__Leptotrichia massiliensis",
                "ani": 88.9426,
                "matched_fragments": 599,
                "total_fragments": 812,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.80",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_007990525.1",
                "gtdb_species": "s__Leptotrichia hofstadii",
                "ani": 88.6863,
                "matched_fragments": 587,
                "total_fragments": 812,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "96.65",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000469385.1",
                "gtdb_species": "s__Leptotrichia sp000469385",
                "ani": 87.4932,
                "matched_fragments": 521,
                "total_fragments": 812,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007990635.1",
                "gtdb_species": "s__Leptotrichia hongkongensis",
                "ani": 87.1815,
                "matched_fragments": 533,
                "total_fragments": 812,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000023905.1",
                "gtdb_species": "s__Leptotrichia buccalis",
                "ani": 86.9709,
                "matched_fragments": 535,
                "total_fragments": 812,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": 0.778,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.2,
        "optimum_ph": null,
        "genome_size": 2815862.667,
        "gc_content": 30.707,
        "coding_genes": 2196.333,
        "rRNA16S_genes": 5.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Leptotrichiaceae",
        "g__Leptotrichia",
        "s__Leptotrichia sp013394795"
    ],
    "_genome_taxon": [
        "Leptotrichia",
        "trevisanii",
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Leptotrichiaceae",
        "g__Leptotrichia",
        "s__Leptotrichia sp013394795",
        "Bacteria",
        "Fusobacteriota",
        "Fusobacteriia",
        "Fusobacteriales",
        "Leptotrichiaceae",
        "Leptotrichia",
        "Leptotrichia",
        "sp013394795"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}