{ "type": "genome", "identifier": "GCA_938020355.1", "organism": "Prevotella multiformis", "title": "Prevotella multiformis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938020355.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14084673", "wgs_master": "CALIID000000000.1", "refseq_category": "na", "taxid": "282402", "species_taxid": "282402", "organism_name": "Prevotella multiformis", "infraspecific_name": "", "isolate": "ERR589471_bin.86_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "ERR589471_bin.86_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/020/355/GCA_938020355.1_ERR589471_bin.86_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella multiformis" ], "sample_taxid": [ "282402" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.964 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3357401", "Number of Sequences": "159", "Longest Sequences (bp)": "211418", "N50 (bp)": "53504", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.1", "Number of CDSs": "2640", "Average Protein Length": "337.5", "Coding Ratio (%)": "79.6", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella multiformis", "strain": "strain=DSM 16608", "accession": "GCA_000191065.1", "taxid": 282402, "species_taxid": 282402, "relation_to_type": "type", "validated": true, "ani": 98.204, "matched_fragments": 806, "total_fragments": 1042, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 89.7972, "matched_fragments": 677, "total_fragments": 1042, "ani_threshold": 95, "status": 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2736291, "species_taxid": 2736291, "relation_to_type": "type", "validated": true, "ani": 76.3958, "matched_fragments": 53, "total_fragments": 1042, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000191065.1", "gtdb_species": "s__Prevotella multiformis", "ani": 98.204, "matched_fragments": 806, "total_fragments": 1042, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.87", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900454835.1", "gtdb_species": "s__Prevotella denticola", "ani": 89.7148, "matched_fragments": 695, "total_fragments": 1042, "gtdb_taxonomy": 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