{ "type": "genome", "identifier": "GCA_938020385.1", "organism": "uncultured Aquimarina sp.", "title": "uncultured Aquimarina sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938020385.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14074027", "wgs_master": "CALIIA000000000.1", "refseq_category": "na", "taxid": "575652", "species_taxid": "575652", "organism_name": "uncultured Aquimarina sp.", "infraspecific_name": "", "isolate": "R3_Bin_Bin_72_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/28", "asm_name": "R3_Bin_Bin_72_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/020/385/GCA_938020385.1_R3_Bin_Bin_72_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-28", "dateModified": "2023-01-28", "datePublished": "2023-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Aquimarina sp." ], "sample_taxid": [ "575652" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.738 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "6190925", "Number of Sequences": "376", "Longest Sequences (bp)": "71108", "N50 (bp)": "22552", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.0", "Number of CDSs": "4717", "Average Protein Length": "349.7", "Coding Ratio (%)": "79.9", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aquimarina latercula", "strain": "strain=DSM 2041", "accession": "GCA_000430645.1", "taxid": 987, "species_taxid": 987, "relation_to_type": "type", "validated": true, "ani": 78.4757, "matched_fragments": 592, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina amphilecti", "strain": "strain=DSM 25232", "accession": "GCA_900109375.1", "taxid": 1038014, "species_taxid": 1038014, "relation_to_type": "type", "validated": true, "ani": 78.3998, "matched_fragments": 614, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina macrocephali", "strain": "strain=JAMB N27", "accession": "GCA_000520995.1", "taxid": 666563, "species_taxid": 666563, "relation_to_type": "type", "validated": true, "ani": 77.8062, "matched_fragments": 420, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina aggregata", "strain": "strain=RZW4-3-2", "accession": "GCA_001632745.1", "taxid": 1642818, "species_taxid": 1642818, "relation_to_type": "type", "validated": true, "ani": 77.6057, "matched_fragments": 483, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina sediminis", "strain": "strain=w01", "accession": "GCA_002895435.1", "taxid": 2070536, "species_taxid": 2070536, "relation_to_type": "type", "validated": true, "ani": 77.5873, "matched_fragments": 377, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina atlantica", "strain": "strain=22II-S11-z7", "accession": "GCA_000626715.1", "taxid": 1317122, "species_taxid": 1317122, "relation_to_type": "type", "validated": true, "ani": 77.5618, "matched_fragments": 408, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina megaterium", "strain": "strain=XH134", "accession": "GCA_000520975.1", "taxid": 1443666, "species_taxid": 1443666, "relation_to_type": "type", "validated": true, "ani": 77.3935, "matched_fragments": 430, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=DSM 19832", "accession": "GCA_000430665.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 77.3312, "matched_fragments": 400, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina muelleri", "strain": "strain=KCTC 12285", "accession": "GCA_014651355.1", "taxid": 279356, "species_taxid": 279356, "relation_to_type": "type", "validated": true, "ani": 77.2982, "matched_fragments": 403, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina spongiae", "strain": "strain=DSM 22623", "accession": "GCA_900141785.1", "taxid": 570521, "species_taxid": 570521, "relation_to_type": "type", "validated": true, "ani": 76.8815, "matched_fragments": 315, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella costae", "strain": "strain=Z3138", "accession": "GCA_013403865.1", "taxid": 2697008, "species_taxid": 2697008, "relation_to_type": "type", "validated": true, "ani": 75.9643, "matched_fragments": 78, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 75.6756, "matched_fragments": 95, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Snuella sedimenti", "strain": "strain=CAU 1569", "accession": "GCA_016428595.1", "taxid": 2798802, "species_taxid": 2798802, "relation_to_type": "type", "validated": true, "ani": 75.6652, "matched_fragments": 76, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 75.5322, "matched_fragments": 77, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 75.4894, "matched_fragments": 80, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 75.4883, "matched_fragments": 73, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 75.3617, "matched_fragments": 80, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium difficile", "strain": "strain=KDG-16", "accession": "GCA_011392115.1", "taxid": 2709659, "species_taxid": 2709659, "relation_to_type": "type", "validated": true, "ani": 75.2394, "matched_fragments": 60, "total_fragments": 1875, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008370685.1", "gtdb_species": "s__Aquimarina sp008370685", "ani": 99.8028, "matched_fragments": 1806, "total_fragments": 1875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003443675.1", "gtdb_species": "s__Aquimarina sp003443675", "ani": 78.987, "matched_fragments": 640, "total_fragments": 1875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109375.1", "gtdb_species": "s__Aquimarina amphilecti", "ani": 78.3978, "matched_fragments": 615, "total_fragments": 1875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007489275.1", "gtdb_species": "s__Aquimarina algiphila", "ani": 77.8451, "matched_fragments": 492, "total_fragments": 1875, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aquimarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.88", 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