{ "type": "genome", "identifier": "GCA_938020445.1", "organism": "uncultured Flavobacteriaceae bacterium", "title": "uncultured Flavobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938020445.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14074030", "wgs_master": "CALIIC000000000.1", "refseq_category": "na", "taxid": "165436", "species_taxid": "165436", "organism_name": "uncultured Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "R3_Bin_Bin_9_sub_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/30", "asm_name": "R3_Bin_Bin_9_sub_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/020/445/GCA_938020445.1_R3_Bin_Bin_9_sub_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-30", "dateModified": "2023-01-30", "datePublished": "2023-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Flavobacteriaceae bacterium" ], "sample_taxid": [ "165436" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.340 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 60.42, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4662446", "Number of Sequences": "207", "Longest Sequences (bp)": "119935", "N50 (bp)": "33605", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.6", "Number of CDSs": "3795", "Average Protein Length": "346.3", "Coding Ratio (%)": "84.6", "Number of rRNAs": "1", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelagihabitans pacificus", "strain": "strain=TP-CH-4", "accession": "GCA_009371985.2", "taxid": 2696054, "species_taxid": 2696054, "relation_to_type": "type", "validated": true, "ani": 77.0718, "matched_fragments": 220, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatimonas sangjinii", "strain": "strain=F202Z8", "accession": "GCA_005943945.1", "taxid": 2583587, "species_taxid": 2583587, "relation_to_type": "type", "validated": true, "ani": 76.7656, "matched_fragments": 154, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter algarum", "strain": "strain=RZ26", "accession": "GCA_005885635.1", "taxid": 2578118, "species_taxid": 2578118, "relation_to_type": "type", "validated": true, "ani": 76.4332, "matched_fragments": 140, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kriegella aquimaris", "strain": "strain=DSM 19886", "accession": "GCA_900103215.1", "taxid": 192904, "species_taxid": 192904, "relation_to_type": "type", "validated": true, "ani": 76.3567, "matched_fragments": 105, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Costertonia aggregata", "strain": "strain=KCCM 42265", "accession": "GCA_013402795.1", "taxid": 343403, "species_taxid": 343403, "relation_to_type": "type", "validated": true, "ani": 76.2021, "matched_fragments": 111, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter thermophilus", "strain": "strain=HT7-2", "accession": "GCA_001020565.1", "taxid": 1197874, "species_taxid": 1197874, "relation_to_type": "type", "validated": true, "ani": 76.1957, "matched_fragments": 90, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter luteus", "strain": "strain=RZ05", "accession": "GCA_009674825.1", "taxid": 2594478, "species_taxid": 2594478, "relation_to_type": "type", "validated": true, "ani": 76.1868, "matched_fragments": 97, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter litoralis", "strain": "strain=SDRB-Phe2", "accession": "GCA_003075045.1", "taxid": 2059726, "species_taxid": 2059726, "relation_to_type": "type", "validated": true, "ani": 76.1765, "matched_fragments": 93, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zobellia galactanivorans", "strain": "strain=DsiJT", "accession": "GCA_000973105.1", "taxid": 63186, "species_taxid": 63186, "relation_to_type": "type", "validated": true, "ani": 76.157, "matched_fragments": 119, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter flavus", "strain": "strain=KCTC 42508", "accession": "GCA_008386635.1", "taxid": 1658664, "species_taxid": 1658664, "relation_to_type": "type", "validated": true, "ani": 76.0283, "matched_fragments": 86, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter arenosicollis", "strain": "strain=BSSL-BM3", "accession": "GCA_014397245.1", "taxid": 2762274, "species_taxid": 2762274, "relation_to_type": "type", "validated": true, "ani": 75.9899, "matched_fragments": 92, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter polysiphoniae", "strain": "strain=KCTC 22021", "accession": "GCA_014673435.1", "taxid": 429344, "species_taxid": 429344, "relation_to_type": "type", "validated": true, "ani": 75.9801, "matched_fragments": 104, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter polysiphoniae", "strain": "strain=DSM 23514", "accession": "GCA_003148665.1", "taxid": 429344, "species_taxid": 429344, "relation_to_type": "type", "validated": true, "ani": 75.9702, "matched_fragments": 103, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibacter echinorum", "strain": "strain=DSM 23522", "accession": "GCA_003259375.1", "taxid": 440515, "species_taxid": 440515, "relation_to_type": "type", "validated": true, "ani": 75.9273, "matched_fragments": 89, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter arenosus", "strain": "strain=CAU 1321", "accession": "GCA_014610845.1", "taxid": 1854708, "species_taxid": 1854708, "relation_to_type": "type", "validated": true, "ani": 75.871, "matched_fragments": 99, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulophaga algicola", "strain": "strain=DSM 14237", "accession": "GCA_000186265.1", "taxid": 59600, "species_taxid": 59600, "relation_to_type": "type", "validated": true, "ani": 75.8287, "matched_fragments": 66, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacterium marinum", "strain": "strain=CCMM003", "accession": "GCA_003626755.1", "taxid": 2419782, "species_taxid": 2419782, "relation_to_type": "type", "validated": true, "ani": 75.8212, "matched_fragments": 101, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda ruestringensis", "strain": "strain=DSM 13258", "accession": "GCA_000224085.1", "taxid": 111501, "species_taxid": 111501, "relation_to_type": "type", "validated": true, "ani": 75.7058, "matched_fragments": 67, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter dokdonensis", "strain": "strain=DSW-8", "accession": "GCA_001447995.1", "taxid": 320912, "species_taxid": 320912, "relation_to_type": "type", "validated": true, "ani": 75.5449, "matched_fragments": 95, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter sedimenticola", "strain": "strain=DSM 19840", "accession": "GCA_900188415.1", "taxid": 228956, "species_taxid": 228956, "relation_to_type": "type", "validated": true, "ani": 75.4751, "matched_fragments": 96, "total_fragments": 1452, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 60.42, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009371985.2", "gtdb_species": "s__TP-CH-4 sp009371985", "ani": 77.0614, "matched_fragments": 221, "total_fragments": 1452, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__TP-CH-4", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005943945.1", "gtdb_species": "s__F202Z8 sp005943945", "ani": 76.7656, "matched_fragments": 154, "total_fragments": 1452, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__F202Z8", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005885635.1", "gtdb_species": "s__RZ26 sp005885635", "ani": 76.4332, "matched_fragments": 140, "total_fragments": 1452, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__RZ26", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014349235.1", "gtdb_species": "s__Euzebyella sp014349235", "ani": 76.4261, "matched_fragments": 92, "total_fragments": 1452, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Euzebyella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103215.1", "gtdb_species": "s__Kriegella aquimaris", "ani": 76.3567, "matched_fragments": 105, "total_fragments": 1452, "gtdb_taxonomy": 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