{ "type": "genome", "identifier": "GCA_938021655.1", "organism": "Streptococcus oralis", "title": "Streptococcus oralis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938021655.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14084432", "wgs_master": "CALIFD000000000.1", "refseq_category": "na", "taxid": "1303", "species_taxid": "1303", "organism_name": "Streptococcus oralis", "infraspecific_name": "", "isolate": "ERR479303_bin.55_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ERR479303_bin.55_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/655/GCA_938021655.1_ERR479303_bin.55_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus oralis" ], "sample_taxid": [ "1303" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.547 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1918805", "Number of Sequences": "30", "Longest Sequences (bp)": "299061", "N50 (bp)": "184362", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.2", "Number of CDSs": "1789", "Average Protein Length": "310.5", "Coding Ratio (%)": "86.8", "Number of rRNAs": "0", "Number of tRNAs": "15", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 13229", "accession": "GCA_002014885.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 95.1981, "matched_fragments": 555, "total_fragments": 626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 24891", "accession": "GCA_001639375.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 95.1787, "matched_fragments": 553, "total_fragments": 626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=NCTC11427", "accession": "GCA_900637025.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 95.1421, "matched_fragments": 556, "total_fragments": 626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000148565.2", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 95.142, "matched_fragments": 545, "total_fragments": 626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=FDAARGOS_1020", "accession": "GCA_016127555.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 95.1296, "matched_fragments": 560, "total_fragments": 626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=ATCC 35037", "accession": "GCA_000164095.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 95.1051, "matched_fragments": 558, "total_fragments": 626, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 92.4393, "matched_fragments": 522, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 87.2566, "matched_fragments": 467, "total_fragments": 626, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, 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