{ "type": "genome", "identifier": "GCA_938021875.1", "organism": "uncultured Prevotella sp.", "title": "uncultured Prevotella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938021875.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14083343", "wgs_master": "CALIFR000000000.1", "refseq_category": "na", "taxid": "159272", "species_taxid": "159272", "organism_name": "uncultured Prevotella sp.", "infraspecific_name": "", "isolate": "ERR1190742_bin.87_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "ERR1190742_bin.87_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/875/GCA_938021875.1_ERR1190742_bin.87_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Prevotella sp." ], "sample_taxid": [ "159272" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.895 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.22, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3122503", "Number of Sequences": "107", "Longest Sequences (bp)": "150977", "N50 (bp)": "47090", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.7", "Number of CDSs": "2452", "Average Protein Length": "358.2", "Coding Ratio (%)": "84.4", "Number of rRNAs": "1", "Number of tRNAs": "34", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6208, "matched_fragments": 343, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotellamassilia timonensis", "strain": "strain=Marseille-P2831", "accession": "GCA_900106785.1", "taxid": 1852370, "species_taxid": 1852370, "relation_to_type": "type", "validated": true, "ani": 79.8002, "matched_fragments": 89, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lascolaii", "strain": "strain=khD1", "accession": "GCA_900079775.1", "taxid": 1776379, "species_taxid": 1776379, "relation_to_type": "type", "validated": true, "ani": 78.7172, "matched_fragments": 201, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ihumii", "strain": "strain=Marseille-P3385", "accession": "GCA_900155655.1", "taxid": 1917878, "species_taxid": 1917878, "relation_to_type": "type", "validated": true, "ani": 78.4065, "matched_fragments": 61, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 78.1693, "matched_fragments": 177, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8389, "matched_fragments": 110, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8113, "matched_fragments": 110, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 77.7299, "matched_fragments": 152, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 77.621, "matched_fragments": 112, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 77.1512, "matched_fragments": 80, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=DSM 11370", "accession": "GCA_000426565.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 77.1087, "matched_fragments": 51, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pleuritidis", "strain": "strain=JCM 14110", "accession": "GCA_000613725.1", "taxid": 407975, "species_taxid": 407975, "relation_to_type": "type", "validated": true, "ani": 77.0193, "matched_fragments": 51, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella multiformis", "strain": "strain=DSM 16608", "accession": "GCA_000191065.1", "taxid": 282402, "species_taxid": 282402, "relation_to_type": "type", "validated": true, "ani": 76.9745, "matched_fragments": 112, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=NCTC13067", "accession": "GCA_900454835.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 76.9601, "matched_fragments": 102, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=DSM 19665", "accession": "GCA_000378085.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.8866, "matched_fragments": 78, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 76.8555, "matched_fragments": 123, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella denticola", "strain": "strain=DSM 20614", "accession": "GCA_000421205.1", "taxid": 28129, "species_taxid": 28129, "relation_to_type": "type", "validated": true, "ani": 76.8513, "matched_fragments": 104, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=ATCC 15930", "accession": "GCA_000698925.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.832, "matched_fragments": 78, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella loescheii", "strain": "strain=JCM 12249", "accession": "GCA_000613485.1", "taxid": 840, "species_taxid": 840, "relation_to_type": "type", "validated": true, "ani": 76.8197, "matched_fragments": 77, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleniella intestinalis", "strain": "strain=PINT", "accession": "GCA_013166595.1", "taxid": 2736291, "species_taxid": 2736291, "relation_to_type": "type", "validated": true, "ani": 76.7731, "matched_fragments": 83, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=JCM 17724", "accession": "GCA_000614245.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 76.7489, "matched_fragments": 70, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 76.7387, "matched_fragments": 121, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 76.7002, "matched_fragments": 72, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 76.6961, "matched_fragments": 70, "total_fragments": 988, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.22, "contamination": 1.04, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900553595.1", "gtdb_species": "s__Prevotella sp900553595", "ani": 97.8717, "matched_fragments": 555, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "97.92", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_019052365.1", "gtdb_species": "s__Prevotella sp000434975", "ani": 80.9746, "matched_fragments": 363, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.22", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.74", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_000235885.1", "gtdb_species": "s__Prevotella stercorea", "ani": 80.6761, "matched_fragments": 338, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.02", "min_intra_species_ani": "96.84", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.69", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900290275.1", "gtdb_species": "s__Prevotella sp900290275", "ani": 80.0726, "matched_fragments": 244, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.80", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_900550035.1", "gtdb_species": "s__Prevotella sp900550035", "ani": 79.2352, "matched_fragments": 302, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900544495.1", "gtdb_species": "s__Prevotella sp900544495", "ani": 79.064, "matched_fragments": 284, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900546575.1", "gtdb_species": "s__Prevotella sp900546575", "ani": 78.9704, "matched_fragments": 277, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.21", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_002490315.1", "gtdb_species": "s__Prevotella sp002490315", "ani": 78.9535, "matched_fragments": 240, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900079775.1", "gtdb_species": "s__Prevotella lascolaii", "ani": 78.7172, "matched_fragments": 201, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "98.20", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900553155.1", "gtdb_species": "s__Prevotella sp900553155", "ani": 78.4028, "matched_fragments": 182, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "96.93", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.75", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900554695.1", "gtdb_species": "s__Prevotella sp900554695", "ani": 78.0103, "matched_fragments": 164, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900552675.1", "gtdb_species": "s__Prevotella sp900552675", "ani": 77.1932, "matched_fragments": 127, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.55", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.75", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900553465.1", "gtdb_species": "s__Prevotella sp900553465", "ani": 77.1889, "matched_fragments": 142, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.76", "min_intra_species_ani": "96.76", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900318915.1", "gtdb_species": "s__Prevotella sp900318915", "ani": 77.0278, "matched_fragments": 134, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.05", "min_intra_species_ani": "95.26", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.81", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_016899955.1", "gtdb_species": "s__Prevotella sp900540415", "ani": 77.0028, "matched_fragments": 154, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_900454835.1", "gtdb_species": "s__Prevotella denticola", "ani": 76.983, "matched_fragments": 101, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000426565.1", "gtdb_species": "s__Prevotella albensis", "ani": 76.9715, "matched_fragments": 50, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000191065.1", "gtdb_species": "s__Prevotella multiformis", "ani": 76.9086, "matched_fragments": 115, "total_fragments": 988, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.87", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905236755.1", "gtdb_species": "s__Prevotella sp905236755", "ani": 76.8883, "matched_fragments": 51, "total_fragments": 988, "gtdb_taxonomy": 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