{ "type": "genome", "identifier": "GCA_938021955.1", "organism": "uncultured Clostridium sp.", "title": "uncultured Clostridium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938021955.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085070", "wgs_master": "CALIGC000000000.1", "refseq_category": "na", "taxid": "59620", "species_taxid": "59620", "organism_name": "uncultured Clostridium sp.", "infraspecific_name": "", "isolate": "ERR688600_bin.35_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR688600_bin.35_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/955/GCA_938021955.1_ERR688600_bin.35_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Clostridium sp." ], "sample_taxid": [ "59620" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "0.449 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1639548", "Number of Sequences": "60", "Longest Sequences (bp)": "122712", "N50 (bp)": "67039", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.1", "Number of CDSs": "1674", "Average Protein Length": "283.4", "Coding Ratio (%)": "86.8", "Number of rRNAs": "1", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium ihumii", "strain": "strain=AP5", "accession": "GCA_000612845.1", "taxid": 1470356, "species_taxid": 1470356, "relation_to_type": "type", "validated": true, "ani": 74.9879, "matched_fragments": 55, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium saccharobutylicum", "strain": "strain=DSM 13864", "accession": "GCA_000473995.1", "taxid": 169679, "species_taxid": 169679, "relation_to_type": "type", "validated": true, "ani": 74.897, "matched_fragments": 52, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium tetanomorphum", "strain": "strain=DSM 4474", "accession": "GCA_017873215.1", "taxid": 1553, "species_taxid": 1553, "relation_to_type": "type", "validated": true, "ani": 74.7353, "matched_fragments": 52, "total_fragments": 519, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003507395.1", "gtdb_species": "s__CAG-273 sp003507395", "ani": 99.0532, "matched_fragments": 363, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-273", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_003534295.1", "gtdb_species": "s__CAG-273 sp003534295", "ani": 83.5776, "matched_fragments": 293, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-273", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_000437855.1", "gtdb_species": "s__CAG-273 sp000437855", "ani": 78.5635, "matched_fragments": 161, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-273", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900753245.1", "gtdb_species": "s__UMGS1663 sp900753245", "ani": 78.4636, "matched_fragments": 148, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1663", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900557195.1", "gtdb_species": "s__CAG-492 sp900557195", "ani": 78.3819, "matched_fragments": 168, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000438355.1", "gtdb_species": "s__CAG-273 sp000438355", "ani": 78.1186, "matched_fragments": 157, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-273", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.50", "min_intra_species_ani": "98.37", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.79", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905214245.1", "gtdb_species": "s__CAG-273 sp905214245", "ani": 78.0153, "matched_fragments": 126, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-273", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000434015.1", "gtdb_species": "s__CAG-492 sp000434015", "ani": 77.9703, "matched_fragments": 149, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.35", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905215615.1", "gtdb_species": "s__CAG-273 sp905215615", "ani": 77.9207, "matched_fragments": 75, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-273", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900553405.1", "gtdb_species": "s__UMGS1663 sp900553405", "ani": 77.8959, "matched_fragments": 144, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1663", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017937285.1", "gtdb_species": "s__CAG-492 sp017937285", "ani": 77.8932, "matched_fragments": 136, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-492", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000434035.1", "gtdb_species": "s__CAG-452 sp000434035", "ani": 77.8216, "matched_fragments": 127, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-452", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017469445.1", "gtdb_species": "s__UMGS1864 sp017469445", "ani": 77.5548, "matched_fragments": 107, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__UMGS1864", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017886645.1", "gtdb_species": "s__CAG-273 sp017886645", "ani": 77.4817, "matched_fragments": 138, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-273", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000437215.1", "gtdb_species": "s__CAG-269 sp000437215", "ani": 77.3059, "matched_fragments": 118, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__TANB77;f__CAG-508;g__CAG-269", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.16, "cell_length": 0.434, "doubling_h": 0.353, "growth_tmp": 33.457, "optimum_tmp": 35.173, "optimum_ph": 6.947, "genome_size": 4165901.003, "gc_content": 29.49, "coding_genes": 3796.985, "rRNA16S_genes": 9.374, "tRNA_genes": 78.312, "gram_stain": 0.945, "sporulation": 0.967, "motility": 0.92, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.944, "thermophilic_range_tmp": 0.055, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__TANB77", "f__CAG-508", "g__CAG-273", "s__CAG-273 sp003507395" ], "_genome_taxon": [ "uncultured", "Clostridium", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__TANB77", "f__CAG-508", "g__CAG-273", "s__CAG-273 sp003507395", "Bacteria", "Bacillota", "A", "Clostridia", "TANB77", "CAG-508", "CAG-273", "CAG-273", "sp003507395" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }