{
    "type": "genome",
    "identifier": "GCA_938021985.1",
    "organism": "uncultured Mycoplasmatota bacterium",
    "title": "uncultured Mycoplasmatota bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_938021985.1",
        "bioproject": "PRJEB51075",
        "biosample": "SAMEA14085567",
        "wgs_master": "CALIEY000000000.1",
        "refseq_category": "na",
        "taxid": "658143",
        "species_taxid": "658143",
        "organism_name": "uncultured Mycoplasmatota bacterium",
        "infraspecific_name": "",
        "isolate": "SRR1761713_bin.28_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/09",
        "asm_name": "SRR1761713_bin.28_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/021/985/GCA_938021985.1_SRR1761713_bin.28_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-09",
    "dateModified": "2023-01-09",
    "datePublished": "2023-01-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Mycoplasmatota bacterium"
        ],
        "sample_taxid": [
            "658143"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Peru"
        ],
        "sample_host_location_id": [],
        "data_size": "0.338 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.0,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1252330",
        "Number of Sequences": "104",
        "Longest Sequences (bp)": "53846",
        "N50 (bp)": "17808",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "26.9",
        "Number of CDSs": "1184",
        "Average Protein Length": "293.9",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 75.0,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900554615.1",
                "gtdb_species": "s__CAG-302 sp900554615",
                "ani": 100.0,
                "matched_fragments": 348,
                "total_fragments": 361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-302",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "97.12",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_001916775.1",
                "gtdb_species": "s__CAG-302 sp001916775",
                "ani": 85.6202,
                "matched_fragments": 238,
                "total_fragments": 361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-302",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.82",
                "min_intra_species_ani": "95.12",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_900548425.1",
                "gtdb_species": "s__CAG-302 sp900548425",
                "ani": 85.4145,
                "matched_fragments": 227,
                "total_fragments": 361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-302",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "98.99",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000431795.1",
                "gtdb_species": "s__CAG-302 sp000431795",
                "ani": 80.7296,
                "matched_fragments": 166,
                "total_fragments": 361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-302",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.47",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900543825.1",
                "gtdb_species": "s__CAG-302 sp900543825",
                "ani": 80.2716,
                "matched_fragments": 165,
                "total_fragments": 361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-302",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900549325.1",
                "gtdb_species": "s__CAG-302 sp900549325",
                "ani": 80.248,
                "matched_fragments": 155,
                "total_fragments": 361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__CAG-302",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
                "min_intra_species_ani": "95.34",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900759875.1",
                "gtdb_species": "s__RUG705 sp900759875",
                "ani": 77.8069,
                "matched_fragments": 50,
                "total_fragments": 361,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RUG705",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RF39",
        "f__UBA660",
        "g__CAG-302",
        "s__CAG-302 sp900554615"
    ],
    "_genome_taxon": [
        "uncultured",
        "Mycoplasmatota",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_I",
        "c__Bacilli_A",
        "o__RF39",
        "f__UBA660",
        "g__CAG-302",
        "s__CAG-302 sp900554615",
        "Bacteria",
        "Bacillota",
        "I",
        "Bacilli",
        "A",
        "RF39",
        "UBA660",
        "CAG-302",
        "CAG-302",
        "sp900554615"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}