{ "type": "genome", "identifier": "GCA_938030635.1", "organism": "Kingella denitrificans", "title": "Kingella denitrificans", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938030635.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14084574", "wgs_master": "CALHHW000000000.1", "refseq_category": "na", "taxid": "502", "species_taxid": "502", "organism_name": "Kingella denitrificans", "infraspecific_name": "", "isolate": "ERR589374_bin.71_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR589374_bin.71_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/030/635/GCA_938030635.1_ERR589374_bin.71_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Kingella denitrificans" ], "sample_taxid": [ "502" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.477 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1715556", "Number of Sequences": "153", "Longest Sequences (bp)": "51135", "N50 (bp)": "16220", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.2", "Number of CDSs": "1658", "Average Protein Length": "278.1", "Coding Ratio (%)": "80.6", "Number of rRNAs": "1", "Number of tRNAs": "36", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kingella denitrificans", "strain": "strain=FDAARGOS_1060", "accession": "GCA_016127355.1", "taxid": 502, "species_taxid": 502, "relation_to_type": "type", "validated": true, "ani": 96.5057, "matched_fragments": 474, "total_fragments": 497, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kingella denitrificans", "strain": "strain=NCTC10995", "accession": "GCA_900451365.1", "taxid": 502, "species_taxid": 502, "relation_to_type": "type", "validated": true, "ani": 96.4836, "matched_fragments": 476, "total_fragments": 497, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kingella denitrificans", "strain": "strain=ATCC 33394", "accession": "GCA_000190695.1", "taxid": 502, "species_taxid": 502, "relation_to_type": "type", "validated": true, "ani": 96.4766, "matched_fragments": 467, "total_fragments": 497, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Eikenella halliae", "strain": "strain=NML130454", "accession": "GCA_001648475.1", "taxid": 1795832, "species_taxid": 1795832, "relation_to_type": "type", "validated": true, "ani": 79.854, "matched_fragments": 222, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eikenella exigua", "strain": "strain=PXX", "accession": "GCA_008805035.1", "taxid": 2528037, "species_taxid": 2528037, "relation_to_type": "type", "validated": true, "ani": 79.0684, "matched_fragments": 151, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella oralis", "strain": "strain=DSM 18271", "accession": "GCA_014054985.1", "taxid": 505, "species_taxid": 505, "relation_to_type": "type", "validated": true, "ani": 78.9155, "matched_fragments": 233, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella bonacorsii", "strain": "strain=Marseille-Q4569", "accession": "GCA_016623605.1", "taxid": 2796361, "species_taxid": 2796361, "relation_to_type": "type", "validated": true, "ani": 78.732, "matched_fragments": 251, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=ATCC 29315", "accession": "GCA_000818035.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 78.5133, "matched_fragments": 209, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=NCTC11050", "accession": "GCA_900475815.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 78.4915, "matched_fragments": 206, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella potus", "strain": "strain=NCTC13336", "accession": "GCA_900451175.1", "taxid": 265175, "species_taxid": 265175, "relation_to_type": "type", "validated": true, "ani": 78.0834, "matched_fragments": 179, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella potus", "strain": "strain=3/SID/1128", "accession": "GCA_022870985.1", "taxid": 265175, "species_taxid": 265175, "relation_to_type": "type", "validated": true, "ani": 77.9497, "matched_fragments": 183, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=DSM 17474", "accession": "GCA_004341385.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 77.8187, "matched_fragments": 191, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella kingae", "strain": "strain=4177/66", "accession": "GCA_022871005.1", "taxid": 504, "species_taxid": 504, "relation_to_type": "type", "validated": true, "ani": 77.7713, "matched_fragments": 211, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella kingae", "strain": "strain=NCTC10529", "accession": "GCA_900475905.1", "taxid": 504, "species_taxid": 504, "relation_to_type": "type", "validated": true, "ani": 77.7624, "matched_fragments": 209, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kingella kingae", "strain": "strain=ATCC 23330", "accession": "GCA_000213535.1", "taxid": 504, "species_taxid": 504, "relation_to_type": "type", "validated": true, "ani": 77.7427, "matched_fragments": 210, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", "taxid": 1282863, "species_taxid": 1282863, "relation_to_type": "type", "validated": true, "ani": 77.6099, "matched_fragments": 181, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simonsiella muelleri", "strain": "strain=ATCC 29453", "accession": "GCA_002951835.1", "taxid": 72, "species_taxid": 72, "relation_to_type": "type", "validated": true, "ani": 77.3811, "matched_fragments": 79, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simonsiella muelleri", "strain": "strain=ATCC 29453", "accession": "GCA_000163775.2", "taxid": 72, "species_taxid": 72, "relation_to_type": "type", "validated": true, "ani": 77.3375, "matched_fragments": 81, "total_fragments": 497, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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