{ "type": "genome", "identifier": "GCA_938030925.1", "organism": "uncultured Alteromonadaceae bacterium", "title": "uncultured Alteromonadaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938030925.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14074174", "wgs_master": "CALHIU000000000.1", "refseq_category": "na", "taxid": "191625", "species_taxid": "191625", "organism_name": "uncultured Alteromonadaceae bacterium", "infraspecific_name": "", "isolate": "S1_Bin_MAXBIN__181_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/25", "asm_name": "S1_Bin_MAXBIN__181_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/030/925/GCA_938030925.1_S1_Bin_MAXBIN_181_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-25", "dateModified": "2023-01-25", "datePublished": "2023-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Alteromonadaceae bacterium" ], "sample_taxid": [ "191625" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.706 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 33.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2457821", "Number of Sequences": "100", "Longest Sequences (bp)": "139493", "N50 (bp)": "52411", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.3", "Number of CDSs": "2270", "Average Protein Length": "308.2", "Coding Ratio (%)": "85.4", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassotalea marina", "strain": "strain=KCTC 42731", "accession": "GCA_014656435.1", "taxid": 1673741, "species_taxid": 1673741, "relation_to_type": "type", "validated": true, "ani": 77.717, "matched_fragments": 89, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea crassostreae", "strain": "strain=LPB0090", "accession": "GCA_001652445.1", "taxid": 1763536, "species_taxid": 1763536, "relation_to_type": "type", "validated": true, "ani": 77.4341, "matched_fragments": 80, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocolwellia agarivorans", "strain": "strain=QM50", "accession": "GCA_002000085.1", "taxid": 1911682, "species_taxid": 1911682, "relation_to_type": "type", "validated": true, "ani": 77.3829, "matched_fragments": 90, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea crassostreae", "strain": "strain=LPB0090", "accession": "GCA_001831495.1", "taxid": 1763536, "species_taxid": 1763536, "relation_to_type": "type", "validated": true, "ani": 77.3662, "matched_fragments": 82, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassomonas actiniarum", "strain": "strain=A5K-106", "accession": "GCA_000948975.1", "taxid": 485447, "species_taxid": 485447, "relation_to_type": "type", "validated": true, "ani": 77.2714, "matched_fragments": 56, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognaticolwellia mytili", "strain": "strain=KCTC 52417", "accession": "GCA_002104475.1", "taxid": 1888913, "species_taxid": 1888913, "relation_to_type": "type", "validated": true, "ani": 77.2502, "matched_fragments": 99, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea piscium", "strain": "strain=DSM 26287", "accession": "GCA_014207645.1", "taxid": 1230533, "species_taxid": 1230533, "relation_to_type": "type", "validated": true, "ani": 77.1195, "matched_fragments": 80, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea profundi", "strain": "strain=CGMCC 1.15922", "accession": "GCA_014653195.1", "taxid": 2036687, "species_taxid": 2036687, "relation_to_type": "type", "validated": true, "ani": 76.8703, "matched_fragments": 88, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia demingiae", "strain": "strain=ACAM 459", "accession": "GCA_007954275.1", "taxid": 89401, "species_taxid": 89401, "relation_to_type": "type", "validated": true, "ani": 76.7232, "matched_fragments": 81, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia marinimaniae", "strain": "strain=MTCD1", "accession": "GCA_002207865.1", "taxid": 1513592, "species_taxid": 1513592, "relation_to_type": "type", "validated": true, "ani": 76.4618, "matched_fragments": 77, "total_fragments": 767, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 33.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014898095.1", "gtdb_species": "s__Thalassotalea sp014898095", "ani": 80.5864, "matched_fragments": 357, "total_fragments": 767, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003390375.1", "gtdb_species": "s__Thalassotalea euphylliae_A", "ani": 77.8596, "matched_fragments": 112, "total_fragments": 767, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014656435.1", "gtdb_species": "s__Thalassotalea_C marina", "ani": 77.6824, "matched_fragments": 90, "total_fragments": 767, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_C", 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"o__Enterobacterales", "f__Alteromonadaceae", "g__Thalassotalea_G", "s__Thalassotalea_G loyana" ], "_genome_taxon": [ "uncultured", "Alteromonadaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Thalassotalea_G", "s__Thalassotalea_G loyana", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Alteromonadaceae", "Thalassotalea", "G", "Thalassotalea", "G", "loyana" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }