{ "type": "genome", "identifier": "GCA_938039995.1", "organism": "Lelliottia amnigena", "title": "Lelliottia amnigena", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938039995.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14083576", "wgs_master": "CALHTW000000000.1", "refseq_category": "na", "taxid": "61646", "species_taxid": "61646", "organism_name": "Lelliottia amnigena", "infraspecific_name": "", "isolate": "ERR1430553_bin.131_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/12", "asm_name": "ERR1430553_bin.131_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/039/995/GCA_938039995.1_ERR1430553_bin.131_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-12", "dateModified": "2023-01-12", "datePublished": "2023-01-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Lelliottia amnigena" ], "sample_taxid": [ "61646" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.258 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.2, "contamination": 12.5, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4361353", "Number of Sequences": "909", "Longest Sequences (bp)": "32786", "N50 (bp)": "5972", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.0", "Number of CDSs": "3514", "Average Protein Length": "285.8", "Coding Ratio (%)": "69.1", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lelliottia amnigena", "strain": "strain=NBRC 105700", "accession": "GCA_001514515.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 99.2296, "matched_fragments": 825, "total_fragments": 983, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lelliottia amnigena", "strain": "strain=FDAARGOS 1444", "accession": "GCA_019047465.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 99.2053, "matched_fragments": 828, "total_fragments": 983, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lelliottia amnigena", "strain": "strain=LMG 2784", "accession": "GCA_002553545.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 99.195, "matched_fragments": 808, "total_fragments": 983, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lelliottia aquatilis", "strain": "strain=6331-17", "accession": "GCA_002923025.1", "taxid": 2080838, "species_taxid": 2080838, "relation_to_type": "type", "validated": true, "ani": 85.5953, "matched_fragments": 731, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia nimipressuralis", "strain": "strain=CCUG 25894", "accession": "GCA_004115925.1", "taxid": 69220, "species_taxid": 69220, "relation_to_type": "type", "validated": true, "ani": 85.5836, "matched_fragments": 739, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 83.7807, "matched_fragments": 711, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=FDAARGOS_1533", "accession": "GCA_020097195.1", "taxid": 301102, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 83.7204, "matched_fragments": 699, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter quasimori", "strain": "strain=090044", "accession": "GCA_003964905.1", "taxid": 2838947, "species_taxid": 2838947, "relation_to_type": "type", "validated": true, "ani": 83.7183, "matched_fragments": 697, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. oharae", "strain": "strain=DSM 16687", 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550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 83.5319, "matched_fragments": 710, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 83.4271, "matched_fragments": 674, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=FDAARGOS_1489", "accession": "GCA_020099335.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": "type", "validated": true, "ani": 80.9356, "matched_fragments": 587, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter amalonaticus", "strain": "strain=JCM 1661", "accession": "GCA_018323885.1", "taxid": 35703, "species_taxid": 35703, "relation_to_type": 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