{
    "type": "genome",
    "identifier": "GCA_938040905.1",
    "organism": "uncultured Lactobacillus sp.",
    "title": "uncultured Lactobacillus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_938040905.1",
        "bioproject": "PRJEB51075",
        "biosample": "SAMEA14084453",
        "wgs_master": "CALHYF000000000.1",
        "refseq_category": "na",
        "taxid": "153152",
        "species_taxid": "153152",
        "organism_name": "uncultured Lactobacillus sp.",
        "infraspecific_name": "",
        "isolate": "ERR525691_bin.14_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/10",
        "asm_name": "ERR525691_bin.14_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/040/905/GCA_938040905.1_ERR525691_bin.14_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-10",
    "dateModified": "2023-01-10",
    "datePublished": "2023-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Lactobacillus sp."
        ],
        "sample_taxid": [
            "153152"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Denmark"
        ],
        "sample_host_location_id": [],
        "data_size": "0.858 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3004531",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "722111",
        "N50 (bp)": "194053",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "2837",
        "Average Protein Length": "298.2",
        "Coding Ratio (%)": "84.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lacticaseibacillus rhamnosus",
                "strain": "strain=NRRL B-442",
                "accession": "GCA_002849515.1",
                "taxid": 47715,
                "species_taxid": 47715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.6843,
                "matched_fragments": 928,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus rhamnosus",
                "strain": "strain=DSM 20021",
                "accession": "GCA_001435405.1",
                "taxid": 47715,
                "species_taxid": 47715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.6835,
                "matched_fragments": 932,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus rhamnosus",
                "strain": "strain=NCTC13764",
                "accession": "GCA_900636965.1",
                "taxid": 47715,
                "species_taxid": 47715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.6823,
                "matched_fragments": 942,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus rhamnosus",
                "strain": "strain=NBRC 3425",
                "accession": "GCA_007990855.1",
                "taxid": 47715,
                "species_taxid": 47715,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.5682,
                "matched_fragments": 837,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lacticaseibacillus zeae",
                "strain": "strain=KCTC 3804",
                "accession": "GCA_000260435.1",
                "taxid": 57037,
                "species_taxid": 57037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2037,
                "matched_fragments": 520,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacticaseibacillus chiayiensis",
                "strain": "strain=NCYUAS",
                "accession": "GCA_004123795.1",
                "taxid": 2100821,
                "species_taxid": 2100821,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0407,
                "matched_fragments": 494,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lacticaseibacillus mingshuiensis",
                "strain": "strain=117-1",
                "accession": "GCA_016861785.1",
                "taxid": 2799574,
                "species_taxid": 2799574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0858,
                "matched_fragments": 54,
                "total_fragments": 984,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900636965.1",
                "gtdb_species": "s__Lacticaseibacillus rhamnosus",
                "ani": 99.6823,
                "matched_fragments": 942,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "96.73",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 237,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000829055.1",
                "gtdb_species": "s__Lacticaseibacillus casei",
                "ani": 81.4083,
                "matched_fragments": 520,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "95.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_000260435.1",
                "gtdb_species": "s__Lacticaseibacillus zeae",
                "ani": 81.2575,
                "matched_fragments": 514,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "96.92",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_004123795.1",
                "gtdb_species": "s__Lacticaseibacillus chiayiensis",
                "ani": 81.1175,
                "matched_fragments": 484,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.62",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000829035.1",
                "gtdb_species": "s__Lacticaseibacillus paracasei",
                "ani": 80.1173,
                "matched_fragments": 437,
                "total_fragments": 984,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "97.86",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 252,
                "status": "-"
            },
            {
                "accession": "GCF_016861765.1",
                "gtdb_species": "s__Lacticaseibacillus sp016861765",
                "ani": 78.2921,
                "matched_fragments": 52,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.51",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003946465.1",
                "gtdb_species": "s__Lacticaseibacillus hegangensis",
                "ani": 77.9641,
                "matched_fragments": 53,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.70",
                "min_intra_species_ani": "95.61",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.148,
        "cell_length": 0.354,
        "doubling_h": -0.086,
        "growth_tmp": 32.808,
        "optimum_tmp": 31.646,
        "optimum_ph": 6.027,
        "genome_size": 2295637.558,
        "gc_content": 40.393,
        "coding_genes": 2119.007,
        "rRNA16S_genes": 5.074,
        "tRNA_genes": 63.614,
        "gram_stain": 1.0,
        "sporulation": 0.009,
        "motility": 0.08,
        "range_salinity": 0.0,
        "facultative_respiration": 0.155,
        "anaerobic_respiration": 0.175,
        "aerobic_respiration": 0.668,
        "mesophilic_range_tmp": 0.977,
        "thermophilic_range_tmp": 0.022,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.983,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.016,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lacticaseibacillus",
        "s__Lacticaseibacillus rhamnosus"
    ],
    "_genome_taxon": [
        "uncultured",
        "Lactobacillus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Lactobacillaceae",
        "g__Lacticaseibacillus",
        "s__Lacticaseibacillus rhamnosus",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Lactobacillaceae",
        "Lacticaseibacillus",
        "Lacticaseibacillus",
        "rhamnosus"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}