{ "type": "genome", "identifier": "GCA_938041015.1", "organism": "uncultured Azospirillum sp.", "title": "uncultured Azospirillum sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938041015.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14084356", "wgs_master": "CALHYG000000000.1", "refseq_category": "na", "taxid": "114712", "species_taxid": "114712", "organism_name": "uncultured Azospirillum sp.", "infraspecific_name": "", "isolate": "ERR414348_bin.37_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR414348_bin.37_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/041/015/GCA_938041015.1_ERR414348_bin.37_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Azospirillum sp." ], "sample_taxid": [ "114712" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "0.407 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.65, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1440018", "Number of Sequences": "60", "Longest Sequences (bp)": "81654", "N50 (bp)": "40467", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.7", "Number of CDSs": "1357", "Average Protein Length": "307.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 3.65, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900542055.1", "gtdb_species": "s__51-20 sp900542055", "ani": 100.0, "matched_fragments": 430, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_900762565.1", "gtdb_species": "s__51-20 sp900762565", "ani": 78.8236, "matched_fragments": 193, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017465405.1", "gtdb_species": "s__51-20 sp017465405", "ani": 78.1009, "matched_fragments": 175, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017937705.1", "gtdb_species": "s__51-20 sp017937705", "ani": 78.0224, "matched_fragments": 172, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017546885.1", "gtdb_species": "s__51-20 sp017546885", "ani": 77.9484, "matched_fragments": 78, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902761715.1", "gtdb_species": "s__51-20 sp902761715", "ani": 77.9088, "matched_fragments": 149, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016288295.1", "gtdb_species": "s__51-20 sp016288295", "ani": 77.659, "matched_fragments": 138, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017470585.1", "gtdb_species": "s__51-20 sp017470585", "ani": 77.5216, "matched_fragments": 108, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017961285.1", "gtdb_species": "s__51-20 sp017961285", "ani": 77.4623, "matched_fragments": 100, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902795665.1", "gtdb_species": "s__51-20 sp902795665", "ani": 77.4416, "matched_fragments": 102, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017650255.1", "gtdb_species": "s__51-20 sp017650255", "ani": 76.9872, "matched_fragments": 71, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910587405.1", "gtdb_species": "s__51-20 sp910587405", "ani": 76.9718, "matched_fragments": 87, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900539605.1", "gtdb_species": "s__51-20 sp900539605", "ani": 76.8871, "matched_fragments": 92, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__51-20", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017626035.1", "gtdb_species": "s__JAGAJR01 sp017626035", "ani": 76.8356, "matched_fragments": 65, "total_fragments": 449, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__RF32;f__CAG-239;g__JAGAJR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.02, "cell_length": 0.408, "doubling_h": null, "growth_tmp": 31.5, "optimum_tmp": 31.365, "optimum_ph": 6.65, "genome_size": 6556262.897, "gc_content": 68.678, "coding_genes": 5382.225, "rRNA16S_genes": 7.916, "tRNA_genes": 82.666, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.923, "range_salinity": 0.0, "facultative_respiration": 0.4, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.6, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.692, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.076, "spiral_cell_shape": 0.23 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__RF32", "f__CAG-239", "g__JAFUYI01", "s__JAFUYI01 sp900542055" ], "_genome_taxon": [ "uncultured", "Azospirillum", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__RF32", "f__CAG-239", "g__JAFUYI01", "s__JAFUYI01 sp900542055", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "RF32", "CAG-239", "JAFUYI01", "JAFUYI01", "sp900542055" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }