{ "type": "genome", "identifier": "GCA_938041035.1", "organism": "uncultured Acidimicrobiales bacterium", "title": "uncultured Acidimicrobiales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938041035.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14073966", "wgs_master": "CALHYX000000000.1", "refseq_category": "na", "taxid": "310071", "species_taxid": "310071", "organism_name": "uncultured Acidimicrobiales bacterium", "infraspecific_name": "", "isolate": "R2_Bin_MAXBIN__055_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/30", "asm_name": "R2_Bin_MAXBIN__055_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/041/035/GCA_938041035.1_R2_Bin_MAXBIN_055_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-30", "dateModified": "2023-01-30", "datePublished": "2023-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acidimicrobiales bacterium" ], "sample_taxid": [ "310071" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.341 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4885320", "Number of Sequences": "113", "Longest Sequences (bp)": "224694", "N50 (bp)": "81505", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.5", "Number of CDSs": "4409", "Average Protein Length": "336.4", "Coding Ratio (%)": "91.1", "Number of rRNAs": "1", "Number of tRNAs": "56", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.5611, "matched_fragments": 243, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 76.5598, "matched_fragments": 250, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.2475, "matched_fragments": 182, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter nonamiensis", "strain": "strain=YM16-303", "accession": "GCA_000350145.1", "taxid": 467093, "species_taxid": 467093, "relation_to_type": "type", "validated": true, "ani": 76.1317, "matched_fragments": 147, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.0125, "matched_fragments": 243, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 75.9038, "matched_fragments": 227, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 75.6753, "matched_fragments": 250, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tomitella cavernea", "strain": "strain=JCM 18542", "accession": "GCA_016599145.1", "taxid": 1387982, "species_taxid": 1387982, "relation_to_type": "type", "validated": true, "ani": 75.3786, "matched_fragments": 89, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides rubriscoriae", "strain": "strain=DSM 23986", "accession": "GCA_008087085.1", "taxid": 642762, "species_taxid": 642762, "relation_to_type": "type", "validated": true, "ani": 75.2127, "matched_fragments": 177, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces mangrovisoli", "strain": "strain=MUSC 149", "accession": "GCA_000974985.2", "taxid": 1428628, "species_taxid": 1428628, "relation_to_type": "type", "validated": true, "ani": 75.0622, "matched_fragments": 195, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allokutzneria albata", "strain": "strain=DSM 44149", "accession": "GCA_900103775.1", "taxid": 211114, "species_taxid": 211114, "relation_to_type": "type", "validated": true, "ani": 74.9986, "matched_fragments": 157, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allokutzneria albata", "strain": "strain=NRRL B-24461", "accession": "GCA_000720955.1", "taxid": 211114, "species_taxid": 211114, "relation_to_type": "type", "validated": true, "ani": 74.978, "matched_fragments": 155, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 74.9562, "matched_fragments": 193, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 74.9227, "matched_fragments": 51, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces atriruber", "strain": "strain=NRRL B-24165", "accession": "GCA_001418325.1", "taxid": 545121, "species_taxid": 545121, "relation_to_type": "type", "validated": true, "ani": 74.907, "matched_fragments": 152, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 74.8416, "matched_fragments": 60, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sorbitolivorans", "strain": "strain=CGMCC 1.15228", "accession": "GCA_003327285.1", "taxid": 1867410, "species_taxid": 1867410, "relation_to_type": "type", "validated": true, "ani": 74.8001, "matched_fragments": 90, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sorbitolivorans", "strain": "strain=CGMCC 1.15228", "accession": "GCA_014641475.1", "taxid": 1867410, "species_taxid": 1867410, "relation_to_type": "type", "validated": true, "ani": 74.7959, "matched_fragments": 91, "total_fragments": 1569, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013002375.1", "gtdb_species": "s__JABDJW01 sp013002375", "ani": 77.5442, "matched_fragments": 272, "total_fragments": 1569, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__SHLQ01;g__JABDJW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002346745.1", "gtdb_species": "s__S20-B6 sp002346745", "ani": 77.0385, "matched_fragments": 201, "total_fragments": 1569, "gtdb_taxonomy": 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