{ "type": "genome", "identifier": "GCA_938041335.1", "organism": "uncultured Ulvibacter sp.", "title": "uncultured Ulvibacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938041335.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14074044", "wgs_master": "CALIAF000000000.1", "refseq_category": "na", "taxid": "431312", "species_taxid": "431312", "organism_name": "uncultured Ulvibacter sp.", "infraspecific_name": "", "isolate": "R3_Bin_METABAT__262_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/27", "asm_name": "R3_Bin_METABAT__262_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/041/335/GCA_938041335.1_R3_Bin_METABAT_262_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-27", "dateModified": "2023-01-27", "datePublished": "2023-01-27", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Ulvibacter sp." ], "sample_taxid": [ "431312" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.924 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3246104", "Number of Sequences": "63", "Longest Sequences (bp)": "221230", "N50 (bp)": "90339", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.4", "Number of CDSs": "2777", "Average Protein Length": "338.3", "Coding Ratio (%)": "86.8", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Patiriisocius marinus", "strain": "strain=NBRC 109484", "accession": "GCA_008974325.1", "taxid": 1397112, "species_taxid": 1397112, "relation_to_type": "type", "validated": true, "ani": 77.4743, "matched_fragments": 247, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patiriisocius marinistellae", "strain": "strain=KK4", "accession": "GCA_009014635.1", "taxid": 2494560, "species_taxid": 2494560, "relation_to_type": "type", "validated": true, "ani": 77.0193, "matched_fragments": 214, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cochleicola gelatinilyticus", "strain": "strain=LPB0005", "accession": "GCA_001637325.1", "taxid": 1763537, "species_taxid": 1763537, "relation_to_type": "type", "validated": true, "ani": 76.9514, "matched_fragments": 102, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ulvibacter antarcticus", "strain": "strain=DSM 23424", "accession": "GCA_003688405.1", "taxid": 442714, "species_taxid": 442714, "relation_to_type": "type", "validated": true, "ani": 76.8951, "matched_fragments": 113, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Constantimarinum furrinae", "strain": "strain=ALE3EI", "accession": "GCA_014295415.1", "taxid": 2562285, "species_taxid": 2562285, "relation_to_type": "type", "validated": true, "ani": 76.7619, "matched_fragments": 69, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 76.7246, "matched_fragments": 63, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomarinibacterium sedimenti", "strain": "strain=CAU 1614", "accession": "GCA_019312585.1", "taxid": 2857106, "species_taxid": 2857106, "relation_to_type": "type", "validated": true, "ani": 76.6946, "matched_fragments": 90, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marixanthomonas ophiurae", "strain": "strain=KMM 3046", "accession": "GCA_003413745.1", "taxid": 387659, "species_taxid": 387659, "relation_to_type": "type", "validated": true, "ani": 76.5896, "matched_fragments": 116, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sinensis", "strain": "strain=S1-10", "accession": "GCA_006346335.1", "taxid": 1382458, "species_taxid": 1382458, "relation_to_type": "type", "validated": true, "ani": 76.5072, "matched_fragments": 88, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonia pacifica", "strain": "strain=DSM 25597", "accession": "GCA_900188275.1", "taxid": 1627892, "species_taxid": 1627892, "relation_to_type": "type", "validated": true, "ani": 76.5069, "matched_fragments": 108, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonia pacifica", "strain": "strain=CGMCC 1.12184", "accession": "GCA_014636685.1", "taxid": 1627892, "species_taxid": 1627892, "relation_to_type": "type", "validated": true, "ani": 76.4872, "matched_fragments": 109, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonia donghaensis", "strain": "strain=DSW-1", "accession": "GCA_001653755.1", "taxid": 326320, "species_taxid": 326320, "relation_to_type": "type", "validated": true, "ani": 76.4861, "matched_fragments": 110, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonia donghaensis", "strain": "strain=DSW-1", "accession": "GCA_000769435.1", "taxid": 326320, "species_taxid": 326320, "relation_to_type": "type", "validated": true, "ani": 76.4226, "matched_fragments": 110, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile fucanivorans", "strain": "strain=DSM 18792", "accession": "GCA_004341235.1", "taxid": 264023, "species_taxid": 264023, "relation_to_type": "type", "validated": true, "ani": 76.3793, "matched_fragments": 67, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Formosa haliotis", "strain": "strain=LMG 28520", "accession": "GCA_001685485.1", "taxid": 1555194, "species_taxid": 1555194, "relation_to_type": "type", "validated": true, "ani": 76.3344, "matched_fragments": 71, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 76.3312, "matched_fragments": 71, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter lectus", "strain": "strain=DSM 15365", "accession": "GCA_900112395.1", "taxid": 221126, "species_taxid": 221126, "relation_to_type": "type", "validated": true, "ani": 76.2645, "matched_fragments": 85, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.2418, "matched_fragments": 80, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.2202, "matched_fragments": 81, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesonia algae", "strain": "strain=DSM 15361", "accession": "GCA_003253545.1", "taxid": 213248, "species_taxid": 213248, "relation_to_type": "type", "validated": true, "ani": 76.2164, "matched_fragments": 80, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter mikhailovii", "strain": "strain=KCTC 12710", "accession": "GCA_014651495.1", "taxid": 425498, "species_taxid": 425498, "relation_to_type": "type", "validated": true, "ani": 76.1973, "matched_fragments": 84, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 76.1751, "matched_fragments": 68, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 76.0447, "matched_fragments": 68, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia algicida", "strain": "strain=OT-1", "accession": "GCA_000154725.1", "taxid": 221066, "species_taxid": 221066, "relation_to_type": "type", "validated": true, "ani": 76.04, "matched_fragments": 67, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribacter aquivivus", "strain": "strain=DSM 16478", "accession": "GCA_900142175.1", "taxid": 228958, "species_taxid": 228958, "relation_to_type": "type", "validated": true, "ani": 76.0046, "matched_fragments": 60, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 75.9439, "matched_fragments": 80, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium terrigena", "strain": "strain=DSM 17934", "accession": "GCA_900108955.1", "taxid": 402734, "species_taxid": 402734, "relation_to_type": "type", "validated": true, "ani": 75.367, "matched_fragments": 60, "total_fragments": 1050, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000170815.1", "gtdb_species": "s__Patiriisocius sp000170815", "ani": 79.2959, "matched_fragments": 497, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008974325.1", "gtdb_species": "s__Patiriisocius marinus", "ani": 77.4618, "matched_fragments": 249, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003450155.1", "gtdb_species": "s__Patiriisocius sp003450155", "ani": 77.3336, "matched_fragments": 113, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003095655.1", "gtdb_species": "s__Dokdonia sp003095655", "ani": 77.1777, "matched_fragments": 80, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Dokdonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018656255.1", "gtdb_species": "s__Patiriisocius sp018656255", "ani": 77.1726, "matched_fragments": 97, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "97.76", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905182755.1", "gtdb_species": "s__Patiriisocius sp905182755", "ani": 77.1383, "matched_fragments": 127, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.66", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000212355.1", "gtdb_species": "s__Dokdonia sp000212355", "ani": 77.0748, "matched_fragments": 83, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Dokdonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.49", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009014635.1", "gtdb_species": "s__Patiriisocius marinistellae", "ani": 77.0437, "matched_fragments": 212, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Patiriisocius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002337605.1", "gtdb_species": "s__Marinirhabdus sp002337605", "ani": 77.0077, "matched_fragments": 115, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marinirhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002375495.1", "gtdb_species": "s__Marinirhabdus sp002375495", "ani": 76.9904, "matched_fragments": 82, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Marinirhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.71", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_002733185.1", "gtdb_species": "s__GCA-002733185 sp002733185", "ani": 76.9394, "matched_fragments": 112, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA-002733185", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014295415.1", "gtdb_species": "s__Altibacter sp014295415", "ani": 76.7619, "matched_fragments": 69, "total_fragments": 1050, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Altibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002163855.1", "gtdb_species": "s__Winogradskyella sp002163855", "ani": 76.6028, "matched_fragments": 75, "total_fragments": 1050, "gtdb_taxonomy": 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