{
    "type": "genome",
    "identifier": "GCA_938041535.1",
    "organism": "uncultured Parabacteroides sp.",
    "title": "uncultured Parabacteroides sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_938041535.1",
        "bioproject": "PRJEB51075",
        "biosample": "SAMEA14083488",
        "wgs_master": "CALITA000000000.1",
        "refseq_category": "na",
        "taxid": "512312",
        "species_taxid": "512312",
        "organism_name": "uncultured Parabacteroides sp.",
        "infraspecific_name": "",
        "isolate": "ERR1430441_bin.67_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/12",
        "asm_name": "ERR1430441_bin.67_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/041/535/GCA_938041535.1_ERR1430441_bin.67_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-12",
    "dateModified": "2023-01-12",
    "datePublished": "2023-01-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Parabacteroides sp."
        ],
        "sample_taxid": [
            "512312"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "1.579 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 45.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5503474",
        "Number of Sequences": "753",
        "Longest Sequences (bp)": "49810",
        "N50 (bp)": "8809",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.0",
        "Number of CDSs": "3483",
        "Average Protein Length": "397.5",
        "Coding Ratio (%)": "75.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parabacteroides faecis",
                "strain": "strain=JCM 18682",
                "accession": "GCA_014647375.1",
                "taxid": 1217282,
                "species_taxid": 1217282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.9639,
                "matched_fragments": 1283,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parabacteroides faecis",
                "strain": "strain=DSM 102983",
                "accession": "GCA_014199665.1",
                "taxid": 1217282,
                "species_taxid": 1217282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.9506,
                "matched_fragments": 1282,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Parabacteroides timonensis",
                "strain": "strain=Marseille-P3236",
                "accession": "GCA_900128505.1",
                "taxid": 1871013,
                "species_taxid": 1871013,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.3721,
                "matched_fragments": 864,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides goldsteinii",
                "strain": "strain=DSM 19448",
                "accession": "GCA_000969835.1",
                "taxid": 328812,
                "species_taxid": 328812,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8476,
                "matched_fragments": 985,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides gordonii",
                "strain": "strain=MS-1",
                "accession": "GCA_000969825.1",
                "taxid": 574930,
                "species_taxid": 574930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6401,
                "matched_fragments": 827,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides gordonii",
                "strain": "strain=FDAARGOS_1522",
                "accession": "GCA_020297465.1",
                "taxid": 574930,
                "species_taxid": 574930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5725,
                "matched_fragments": 829,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides johnsonii",
                "strain": "strain=DSM 18315",
                "accession": "GCA_025151045.1",
                "taxid": 387661,
                "species_taxid": 387661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1571,
                "matched_fragments": 344,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides merdae",
                "strain": "strain=ATCC 43184",
                "accession": "GCA_025151215.1",
                "taxid": 46503,
                "species_taxid": 46503,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7751,
                "matched_fragments": 333,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parabacteroides acidifaciens",
                "strain": "strain=426_9",
                "accession": "GCA_014385205.1",
                "taxid": 2290935,
                "species_taxid": 2290935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5438,
                "matched_fragments": 375,
                "total_fragments": 1455,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 45.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014647375.1",
                "gtdb_species": "s__Parabacteroides faecis",
                "ani": 97.9639,
                "matched_fragments": 1283,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003480915.1",
                "gtdb_species": "s__Parabacteroides sp003480915",
                "ani": 88.4844,
                "matched_fragments": 958,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "97.67",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_900128505.1",
                "gtdb_species": "s__Parabacteroides timonensis",
                "ani": 84.3722,
                "matched_fragments": 864,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.14",
                "min_intra_species_ani": "96.11",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_015550595.1",
                "gtdb_species": "s__Parabacteroides sp900540715",
                "ani": 83.9441,
                "matched_fragments": 850,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000969835.1",
                "gtdb_species": "s__Parabacteroides goldsteinii",
                "ani": 83.8405,
                "matched_fragments": 986,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.03",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 37,
                "status": "-"
            },
            {
                "accession": "GCA_905196875.1",
                "gtdb_species": "s__Parabacteroides sp905196875",
                "ani": 82.5872,
                "matched_fragments": 762,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000969825.1",
                "gtdb_species": "s__Parabacteroides gordonii",
                "ani": 81.6403,
                "matched_fragments": 827,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000156495.1",
                "gtdb_species": "s__Parabacteroides johnsonii",
                "ani": 79.0812,
                "matched_fragments": 344,
                "total_fragments": 1455,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "96.67",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 13,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.047,
        "cell_length": 0.432,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.8,
        "optimum_ph": 7.25,
        "genome_size": 5037952.719,
        "gc_content": 44.545,
        "coding_genes": 3853.0,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 82.0,
        "gram_stain": 0.166,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tannerellaceae",
        "g__Parabacteroides",
        "s__Parabacteroides faecis"
    ],
    "_genome_taxon": [
        "uncultured",
        "Parabacteroides",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Tannerellaceae",
        "g__Parabacteroides",
        "s__Parabacteroides faecis",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Tannerellaceae",
        "Parabacteroides",
        "Parabacteroides",
        "faecis"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}