{
    "type": "genome",
    "identifier": "GCA_938041545.1",
    "organism": "uncultured Rothia sp.",
    "title": "uncultured Rothia sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_938041545.1",
        "bioproject": "PRJEB51075",
        "biosample": "SAMEA14084724",
        "wgs_master": "CALISM000000000.1",
        "refseq_category": "na",
        "taxid": "316088",
        "species_taxid": "316088",
        "organism_name": "uncultured Rothia sp.",
        "infraspecific_name": "",
        "isolate": "ERR589515_bin.13_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/10",
        "asm_name": "ERR589515_bin.13_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/041/545/GCA_938041545.1_ERR589515_bin.13_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-10",
    "dateModified": "2023-01-10",
    "datePublished": "2023-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Rothia sp."
        ],
        "sample_taxid": [
            "316088"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.642 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2270039",
        "Number of Sequences": "21",
        "Longest Sequences (bp)": "710552",
        "N50 (bp)": "301927",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.4",
        "Number of CDSs": "1770",
        "Average Protein Length": "350.6",
        "Coding Ratio (%)": "82.0",
        "Number of rRNAs": "8",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Rothia mucilaginosa",
                "strain": "strain=ATCC 25296",
                "accession": "GCA_000175615.1",
                "taxid": 43675,
                "species_taxid": 43675,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 94.314,
                "matched_fragments": 681,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia aeria",
                "strain": "strain=FDAARGOS_1137",
                "accession": "GCA_016726365.1",
                "taxid": 172042,
                "species_taxid": 172042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0221,
                "matched_fragments": 264,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=NCTC10917",
                "accession": "GCA_900455895.1",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0135,
                "matched_fragments": 219,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=ATCC 17931",
                "accession": "GCA_000164695.2",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0135,
                "matched_fragments": 222,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia aerolata",
                "strain": "strain=CCM 8669",
                "accession": "GCA_014635585.1",
                "taxid": 1812262,
                "species_taxid": 1812262,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3183,
                "matched_fragments": 189,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia terrae",
                "strain": "strain=LMG 23708",
                "accession": "GCA_012396615.1",
                "taxid": 396015,
                "species_taxid": 396015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2606,
                "matched_fragments": 136,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glutamicibacter mysorens",
                "strain": "strain=NBRC 103060",
                "accession": "GCA_001552115.1",
                "taxid": 257984,
                "species_taxid": 257984,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3555,
                "matched_fragments": 73,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter luteolus",
                "strain": "strain=DSM 13067",
                "accession": "GCA_008973725.1",
                "taxid": 98672,
                "species_taxid": 98672,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3125,
                "matched_fragments": 83,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia koreensis",
                "strain": "strain=JCM 15915",
                "accession": "GCA_004136575.1",
                "taxid": 592378,
                "species_taxid": 592378,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1662,
                "matched_fragments": 85,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kocuria rhizophila",
                "strain": "strain=TA68",
                "accession": "GCA_003667225.1",
                "taxid": 72000,
                "species_taxid": 72000,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1034,
                "matched_fragments": 104,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glutamicibacter mishrai",
                "strain": "strain=S5-52",
                "accession": "GCA_012221945.1",
                "taxid": 1775880,
                "species_taxid": 1775880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0545,
                "matched_fragments": 76,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces archimandritae",
                "strain": "strain=G127AT",
                "accession": "GCA_018024495.1",
                "taxid": 2781962,
                "species_taxid": 2781962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0115,
                "matched_fragments": 53,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arsenicicoccus bolidensis",
                "strain": "strain=DSM 15745",
                "accession": "GCA_000426385.1",
                "taxid": 229480,
                "species_taxid": 229480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1731,
                "matched_fragments": 55,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clavibacter phaseoli",
                "strain": "strain=LPPA 982",
                "accession": "GCA_021922925.1",
                "taxid": 1734031,
                "species_taxid": 1734031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9193,
                "matched_fragments": 57,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001548235.1",
                "gtdb_species": "s__Rothia mucilaginosa_B",
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                "matched_fragments": 695,
                "total_fragments": 746,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.72",
                "min_intra_species_ani": "95.51",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
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                "total_fragments": 746,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.99",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 44,
                "status": "-"
            },
            {
                "accession": "GCF_001808955.1",
                "gtdb_species": "s__Rothia sp001808955",
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                "matched_fragments": 698,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
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                "status": "-"
            },
            {
                "accession": "GCA_015265375.1",
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                "mean_intra_species_ani": "95.30",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_001061665.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
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                "mean_intra_species_ani": "97.28",
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            },
            {
                "accession": "GCF_901875305.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
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                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "range_salinity": null,
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        "aerobic_respiration": 0.875,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.6,
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        "coccobacillus_cell_shape": 0.4,
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    "_gtdb_taxon": [
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        "p__Actinomycetota",
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    ],
    "_genome_taxon": [
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        "sp.",
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        "c__Actinomycetes",
        "o__Actinomycetales",
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        "Bacteria",
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        "Actinomycetes",
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        "Micrococcaceae",
        "Rothia",
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    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
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    ],
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}