{
    "type": "genome",
    "identifier": "GCA_938041565.1",
    "organism": "Fusobacterium varium",
    "title": "Fusobacterium varium",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "European Bioinformatics Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_938041565.1",
        "bioproject": "PRJEB51075",
        "biosample": "SAMEA14083494",
        "wgs_master": "CALITD000000000.1",
        "refseq_category": "na",
        "taxid": "856",
        "species_taxid": "856",
        "organism_name": "Fusobacterium varium",
        "infraspecific_name": "",
        "isolate": "ERR1430453_bin.113_CONCOCT_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/10",
        "asm_name": "ERR1430453_bin.113_CONCOCT_v1.1_MAG",
        "submitter": "European Bioinformatics Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/041/565/GCA_938041565.1_ERR1430453_bin.113_CONCOCT_v1.1_MAG",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-10",
    "dateModified": "2023-01-10",
    "datePublished": "2023-01-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium varium"
        ],
        "sample_taxid": [
            "856"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.825 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 80.21,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3032216",
        "Number of Sequences": "383",
        "Longest Sequences (bp)": "49211",
        "N50 (bp)": "9720",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.1",
        "Number of CDSs": "2516",
        "Average Protein Length": "302.9",
        "Coding Ratio (%)": "75.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "11",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Fusobacterium varium",
                "strain": "strain=NCTC10560",
                "accession": "GCA_900637705.1",
                "taxid": 856,
                "species_taxid": 856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.709,
                "matched_fragments": 787,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium ulcerans",
                "strain": "strain=ATCC 49185",
                "accession": "GCA_003019675.1",
                "taxid": 861,
                "species_taxid": 861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1252,
                "matched_fragments": 680,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium ulcerans",
                "strain": "strain=ATCC 49185",
                "accession": "GCA_000158315.2",
                "taxid": 861,
                "species_taxid": 861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1002,
                "matched_fragments": 678,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium necrogenes",
                "strain": "strain=NCTC10723",
                "accession": "GCA_900450765.1",
                "taxid": 858,
                "species_taxid": 858,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0352,
                "matched_fragments": 197,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium periodonticum",
                "strain": "strain=ATCC 33693",
                "accession": "GCA_000160475.1",
                "taxid": 860,
                "species_taxid": 860,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.7292,
                "matched_fragments": 123,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium pseudoperiodonticum",
                "strain": "strain=KCOM 1259",
                "accession": "GCA_002761955.1",
                "taxid": 2663009,
                "species_taxid": 2663009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5184,
                "matched_fragments": 117,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cetobacterium somerae",
                "strain": "strain=ATCC BAA-474",
                "accession": "GCA_000479045.1",
                "taxid": 188913,
                "species_taxid": 188913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4143,
                "matched_fragments": 137,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium perfoetens",
                "strain": "strain=ATCC 29250",
                "accession": "GCA_000622245.1",
                "taxid": 852,
                "species_taxid": 852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.358,
                "matched_fragments": 175,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cetobacterium ceti",
                "strain": "strain=ATCC 700028",
                "accession": "GCA_900167275.1",
                "taxid": 180163,
                "species_taxid": 180163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.004,
                "matched_fragments": 143,
                "total_fragments": 832,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 80.21,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900637705.1",
                "gtdb_species": "s__Fusobacterium_A varium",
                "ani": 99.7091,
                "matched_fragments": 787,
                "total_fragments": 832,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "98.59",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 10,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002356455.1",
                "gtdb_species": "s__Fusobacterium_A varium_A",
                "ani": 89.8208,
                "matched_fragments": 718,
                "total_fragments": 832,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.56",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900683735.1",
                "gtdb_species": "s__Fusobacterium_A ulcerans_A",
                "ani": 88.4444,
                "matched_fragments": 727,
                "total_fragments": 832,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003019675.1",
                "gtdb_species": "s__Fusobacterium_A ulcerans",
                "ani": 88.0982,
                "matched_fragments": 682,
                "total_fragments": 832,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_900543175.1",
                "gtdb_species": "s__Fusobacterium_A sp900543175",
                "ani": 79.649,
                "matched_fragments": 300,
                "total_fragments": 832,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_900555845.1",
                "gtdb_species": "s__Fusobacterium_A sp900555845",
                "ani": 79.2821,
                "matched_fragments": 206,
                "total_fragments": 832,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.55",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": -0.155,
        "doubling_h": -0.328,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 3728451.25,
        "gc_content": 28.497,
        "coding_genes": 3261.0,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 58.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Fusobacteriaceae",
        "g__Fusobacterium_A",
        "s__Fusobacterium_A varium"
    ],
    "_genome_taxon": [
        "Fusobacterium",
        "varium",
        "d__Bacteria",
        "p__Fusobacteriota",
        "c__Fusobacteriia",
        "o__Fusobacteriales",
        "f__Fusobacteriaceae",
        "g__Fusobacterium_A",
        "s__Fusobacterium_A varium",
        "Bacteria",
        "Fusobacteriota",
        "Fusobacteriia",
        "Fusobacteriales",
        "Fusobacteriaceae",
        "Fusobacterium",
        "A",
        "Fusobacterium",
        "A",
        "varium"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}