{ "type": "genome", "identifier": "GCA_938041585.1", "organism": "uncultured Lachnospiraceae bacterium", "title": "uncultured Lachnospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938041585.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14083491", "wgs_master": "CALITB000000000.1", "refseq_category": "na", "taxid": "297314", "species_taxid": "297314", "organism_name": "uncultured Lachnospiraceae bacterium", "infraspecific_name": "", "isolate": "ERR1430444_bin.24_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "ERR1430444_bin.24_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/041/585/GCA_938041585.1_ERR1430444_bin.24_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lachnospiraceae bacterium" ], "sample_taxid": [ "297314" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.835 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.47, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2921135", "Number of Sequences": "146", "Longest Sequences (bp)": "92367", "N50 (bp)": "29917", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.2", "Number of CDSs": "2634", "Average Protein Length": "322.8", "Coding Ratio (%)": "87.3", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Clostridium fessum", "strain": "strain=SNUG30386", "accession": "GCA_003024715.1", "taxid": 2126740, "species_taxid": 2126740, "relation_to_type": "type", "validated": true, "ani": 78.0337, "matched_fragments": 152, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia obeum", "strain": "strain=ATCC 29174", "accession": "GCA_025147765.1", "taxid": 40520, "species_taxid": 40520, "relation_to_type": "type", "validated": true, "ani": 77.5874, "matched_fragments": 72, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnoclostridium edouardi", "strain": "strain=Marseille-P3397", "accession": "GCA_900240245.1", "taxid": 1926283, "species_taxid": 1926283, "relation_to_type": "type", "validated": true, "ani": 77.3901, "matched_fragments": 70, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora aerotolerans", "strain": "strain=DSM 5434", "accession": "GCA_000687555.1", "taxid": 36832, "species_taxid": 36832, "relation_to_type": "type", "validated": true, "ani": 77.3892, "matched_fragments": 105, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_025150245.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3635, "matched_fragments": 57, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_000169235.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 77.276, "matched_fragments": 57, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella effluvii", "strain": "strain=DSM 24995", "accession": "GCA_003201875.1", "taxid": 1096246, "species_taxid": 1096246, "relation_to_type": "type", "validated": true, "ani": 77.2037, "matched_fragments": 132, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002234575.2", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 77.2001, "matched_fragments": 90, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 77.2001, "matched_fragments": 90, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1176, "matched_fragments": 117, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 77.1162, "matched_fragments": 90, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora 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"strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9636, "matched_fragments": 80, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora celerecrescens", "strain": "strain=18A", "accession": "GCA_002797975.1", "taxid": 29354, "species_taxid": 29354, "relation_to_type": "type", "validated": true, "ani": 76.9338, "matched_fragments": 100, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=ATCC 19403", "accession": "GCA_900105615.1", "taxid": 29370, "species_taxid": 29370, "relation_to_type": "type", "validated": true, "ani": 76.7563, "matched_fragments": 104, "total_fragments": 899, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacrimispora sphenoides", "strain": "strain=NCTC507", "accession": "GCA_900461315.1", 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