{ "type": "genome", "identifier": "GCA_938041665.1", "organism": "uncultured Lactobacillus sp.", "title": "uncultured Lactobacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938041665.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14083530", "wgs_master": "CALITI000000000.1", "refseq_category": "na", "taxid": "153152", "species_taxid": "153152", "organism_name": "uncultured Lactobacillus sp.", "infraspecific_name": "", "isolate": "ERR1430499_bin.12_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR1430499_bin.12_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/041/665/GCA_938041665.1_ERR1430499_bin.12_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lactobacillus sp." ], "sample_taxid": [ "153152" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.429 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1467697", "Number of Sequences": "512", "Longest Sequences (bp)": "12955", "N50 (bp)": "3562", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.8", "Number of CDSs": "1088", "Average Protein Length": "283.0", "Coding Ratio (%)": "62.9", "Number of rRNAs": "0", "Number of tRNAs": "2", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limosilactobacillus oris", "strain": "strain=DSM 4864", "accession": "GCA_001434465.1", "taxid": 1632, "species_taxid": 1632, "relation_to_type": "type", "validated": true, "ani": 79.0047, "matched_fragments": 97, "total_fragments": 213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_000160835.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 78.753, "matched_fragments": 103, "total_fragments": 213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus antri", "strain": "strain=DSM 16041", "accession": "GCA_001435475.1", "taxid": 227943, "species_taxid": 227943, "relation_to_type": "type", "validated": true, "ani": 78.7188, "matched_fragments": 101, "total_fragments": 213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001435935.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 78.3078, "matched_fragments": 102, "total_fragments": 213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus panis", "strain": "strain=DSM 6035", "accession": "GCA_001027985.1", "taxid": 47493, "species_taxid": 47493, "relation_to_type": "type", "validated": true, "ani": 78.2059, "matched_fragments": 102, "total_fragments": 213, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus pontis", "strain": "strain=DSM 8475", "accession": "GCA_001435345.1", "taxid": 35787, "species_taxid": 35787, "relation_to_type": "type", "validated": true, "ani": 77.0811, "matched_fragments": 61, "total_fragments": 213, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 45.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019117185.1", "gtdb_species": "s__Limosilactobacillus intestinipullorum", "ani": 98.9581, "matched_fragments": 195, "total_fragments": 213, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_902834055.1", "gtdb_species": "s__Limosilactobacillus sp902834055", "ani": 92.8587, "matched_fragments": 74, "total_fragments": 213, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001434465.1", "gtdb_species": "s__Limosilactobacillus oris", "ani": 79.0047, "matched_fragments": 97, "total_fragments": 213, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.39", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_905214235.1", "gtdb_species": "s__Limosilactobacillus sp905214235", 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"total_fragments": 213, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002940945.1", "gtdb_species": "s__Limosilactobacillus pontis_A", "ani": 77.2696, "matched_fragments": 54, "total_fragments": 213, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.148, "cell_length": 0.354, "doubling_h": -0.086, "growth_tmp": 32.808, "optimum_tmp": 31.646, "optimum_ph": 6.027, "genome_size": 2295637.558, "gc_content": 40.393, "coding_genes": 2119.007, "rRNA16S_genes": 5.074, "tRNA_genes": 63.614, "gram_stain": 1.0, "sporulation": 0.009, "motility": 0.08, "range_salinity": 0.0, "facultative_respiration": 0.155, "anaerobic_respiration": 0.175, "aerobic_respiration": 0.668, "mesophilic_range_tmp": 0.977, "thermophilic_range_tmp": 0.022, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.983, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.016, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Limosilactobacillus", "s__Limosilactobacillus intestinipullorum" ], "_genome_taxon": [ "uncultured", "Lactobacillus", "sp.", "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Lactobacillales", "f__Lactobacillaceae", "g__Limosilactobacillus", "s__Limosilactobacillus intestinipullorum", "Bacteria", "Bacillota", "Bacilli", "Lactobacillales", "Lactobacillaceae", "Limosilactobacillus", "Limosilactobacillus", "intestinipullorum" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }