{ "type": "genome", "identifier": "GCA_938044795.1", "organism": "Marinobacter nauticus", "title": "Marinobacter nauticus", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938044795.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14073983", "wgs_master": "CALIOX000000000.1", "refseq_category": "na", "taxid": "2743", "species_taxid": "2743", "organism_name": "Marinobacter nauticus", "infraspecific_name": "", "isolate": "R2_Bin_METABAT__17_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/28", "asm_name": "R2_Bin_METABAT__17_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "GCF_938044795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/044/795/GCA_938044795.1_R2_Bin_METABAT_17_1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-28", "dateModified": "2023-01-28", "datePublished": "2023-01-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter nauticus" ], "sample_taxid": [ "2743" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.047 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3685983", "Number of Sequences": "25", "Longest Sequences (bp)": "497724", "N50 (bp)": "354421", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.4", "Number of CDSs": "3387", "Average Protein Length": "331.1", "Coding Ratio (%)": "91.3", "Number of rRNAs": "2", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter nauticus", "strain": "strain=DSM 50418", "accession": "GCA_003634635.1", "taxid": 2743, "species_taxid": 2743, "relation_to_type": "type", "validated": true, "ani": 97.5214, "matched_fragments": 1105, "total_fragments": 1215, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 82.9772, "matched_fragments": 674, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter daepoensis", "strain": "strain=DSM 16072", "accession": "GCA_000421165.1", "taxid": 262077, "species_taxid": 262077, "relation_to_type": "type", "validated": true, "ani": 81.9967, "matched_fragments": 730, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis subsp. alexandrii", "strain": "strain=LZ-6", "accession": "GCA_005871095.1", "taxid": 2570350, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 81.7388, "matched_fragments": 699, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 81.5728, "matched_fragments": 698, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 81.2673, "matched_fragments": 613, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 80.6355, "matched_fragments": 541, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=JCM 30472", "accession": "GCA_003007685.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 80.4443, "matched_fragments": 616, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=CGMCC 1.12481", "accession": "GCA_014637865.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 80.4225, "matched_fragments": 608, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 80.3741, "matched_fragments": 463, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", "accession": "GCA_014652295.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 80.3488, "matched_fragments": 470, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 80.0587, "matched_fragments": 464, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 79.6912, "matched_fragments": 480, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 79.6333, "matched_fragments": 458, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 79.5367, "matched_fragments": 517, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.3456, "matched_fragments": 429, "total_fragments": 1215, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000284615.1", "gtdb_species": "s__Marinobacter hydrocarbonoclasticus", "ani": 99.9967, "matched_fragments": 1214, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 26, "status": "conclusive" }, { "accession": "GCF_002258215.1", "gtdb_species": "s__Marinobacter vinifirmus", "ani": 82.9772, "matched_fragments": 674, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.96", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001447155.2", "gtdb_species": "s__Marinobacter sp001447155", "ani": 82.2438, "matched_fragments": 677, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000421165.1", "gtdb_species": "s__Marinobacter daepoensis", "ani": 82.0191, "matched_fragments": 728, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.99", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003007715.1", "gtdb_species": "s__Marinobacter shengliensis", "ani": 81.5628, "matched_fragments": 699, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.96", "min_intra_species_ani": "95.10", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_003007675.1", "gtdb_species": "s__Marinobacter fuscus", "ani": 81.2428, "matched_fragments": 616, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114925.1", "gtdb_species": "s__Marinobacter pelagius", "ani": 80.6245, "matched_fragments": 542, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003007685.1", "gtdb_species": "s__Marinobacter halophilus", "ani": 80.4475, "matched_fragments": 616, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900114155.1", "gtdb_species": "s__Marinobacter persicus", "ani": 80.3641, "matched_fragments": 465, "total_fragments": 1215, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.242, "cell_length": 0.29, "doubling_h": -0.125, "growth_tmp": 30.29, "optimum_tmp": 30.084, "optimum_ph": 7.545, "genome_size": 4220111.947, "gc_content": 56.678, "coding_genes": 3548.15, "rRNA16S_genes": 2.444, "tRNA_genes": 48.833, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.96, "range_salinity": 1.0, "facultative_respiration": 0.137, "anaerobic_respiration": 0.034, "aerobic_respiration": 0.827, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.958, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.041, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Oleiphilaceae", "g__Marinobacter", "s__Marinobacter nauticus" ], "_genome_taxon": [ "Marinobacter", "nauticus", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Oleiphilaceae", "g__Marinobacter", "s__Marinobacter nauticus", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Oleiphilaceae", "Marinobacter", "Marinobacter", "nauticus" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" }, { "id": "MEO_0000419", "label": "plant body associated" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }