{ "type": "genome", "identifier": "GCA_938047695.1", "organism": "uncultured Cloacibacillus sp.", "title": "uncultured Cloacibacillus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938047695.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085889", "wgs_master": "CALINT000000000.1", "refseq_category": "na", "taxid": "889794", "species_taxid": "889794", "organism_name": "uncultured Cloacibacillus sp.", "infraspecific_name": "", "isolate": "SRR5580102_bin.113_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR5580102_bin.113_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/047/695/GCA_938047695.1_SRR5580102_bin.113_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Cloacibacillus sp." ], "sample_taxid": [ "889794" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.722 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2567608", "Number of Sequences": "110", "Longest Sequences (bp)": "182640", "N50 (bp)": "41986", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.4", "Number of CDSs": "2352", "Average Protein Length": "311.4", "Coding Ratio (%)": "85.6", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cloacibacillus evryensis", "strain": "strain=DSM 19522", "accession": "GCA_000585335.1", "taxid": 508460, "species_taxid": 508460, "relation_to_type": "type", "validated": true, "ani": 79.2892, "matched_fragments": 339, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cloacibacillus porcorum", "strain": "strain=CL-84", "accession": "GCA_001701045.1", "taxid": 1197717, "species_taxid": 1197717, "relation_to_type": "type", "validated": true, "ani": 79.2234, "matched_fragments": 344, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Synergistes jonesii", "strain": "strain=ATCC 49833", "accession": "GCA_001757485.1", "taxid": 2754, "species_taxid": 2754, "relation_to_type": "type", "validated": true, "ani": 78.6679, "matched_fragments": 289, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Synergistes jonesii", "strain": "strain=78-1", "accession": "GCA_001757465.1", "taxid": 2754, "species_taxid": 2754, "relation_to_type": "type", "validated": true, "ani": 78.663, "matched_fragments": 294, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Synergistes jonesii", "strain": "strain=78-1", "accession": "GCA_000712295.1", "taxid": 2754, "species_taxid": 2754, "relation_to_type": "type", "validated": true, "ani": 78.6455, "matched_fragments": 305, "total_fragments": 797, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900544635.1", "gtdb_species": "s__Caccocola faecigallinarum", "ani": 95.7899, "matched_fragments": 456, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Caccocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.54", "min_intra_species_ani": "96.25", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_018716365.1", "gtdb_species": "s__Caccocola faecipullorum", "ani": 90.9152, "matched_fragments": 468, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Caccocola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"status": "-" }, { "accession": "GCF_000585335.1", "gtdb_species": "s__Cloacibacillus evryensis", "ani": 79.2892, "matched_fragments": 339, "total_fragments": 797, "gtdb_taxonomy": "d__Bacteria;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;g__Cloacibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.41", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.049, "cell_length": 0.464, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 38.0, "optimum_ph": 6.75, "genome_size": 3536801.0, "gc_content": 55.349, "coding_genes": 3115.5, "rRNA16S_genes": 5.0, "tRNA_genes": 51.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Synergistota", "c__Synergistia", "o__Synergistales", "f__Synergistaceae", "g__Caccocola", "s__Caccocola faecigallinarum" ], "_genome_taxon": [ "uncultured", "Cloacibacillus", "sp.", "d__Bacteria", "p__Synergistota", "c__Synergistia", "o__Synergistales", "f__Synergistaceae", "g__Caccocola", "s__Caccocola faecigallinarum", "Bacteria", "Synergistota", "Synergistia", "Synergistales", "Synergistaceae", "Caccocola", "Caccocola", "faecigallinarum" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }