{ "tc_result": [ { "organism_name": "Bacteroides gallinarum", "strain": "strain=JCM 13658", "accession": "GCA_000613665.1", "taxid": 376806, "species_taxid": 376806, "relation_to_type": "type", "validated": true, "ani": 79.0355, "matched_fragments": 348, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides gallinarum", "strain": "strain=DSM 18171", "accession": "GCA_000374365.1", "taxid": 376806, "species_taxid": 376806, "relation_to_type": "type", "validated": true, "ani": 78.9902, "matched_fragments": 353, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides humanifaecis", "strain": "strain=KGMB07931", "accession": "GCA_017309675.2", "taxid": 2792859, "species_taxid": 2792859, "relation_to_type": "type", "validated": true, "ani": 78.8466, "matched_fragments": 321, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_025147325.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5543, "matched_fragments": 309, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=FDAARGOS_901", "accession": "GCA_016117815.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 78.5106, "matched_fragments": 326, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=ATCC 8492", "accession": "GCA_000154205.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 78.5071, "matched_fragments": 331, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=ATCC 8492", "accession": "GCA_025147485.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 78.492, "matched_fragments": 328, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=DSM 19555", "accession": "GCA_900106605.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4804, "matched_fragments": 310, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides stercoris", "strain": "strain=ATCC 43183", "accession": "GCA_000154525.1", "taxid": 46506, "species_taxid": 46506, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4593, "matched_fragments": 314, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides uniformis", "strain": "strain=DSM 6597", "accession": "GCA_900107315.1", "taxid": 820, "species_taxid": 820, "relation_to_type": "type", "validated": true, "ani": 78.4537, "matched_fragments": 332, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides rodentium", "strain": "strain=JCM 16496", "accession": "GCA_000614125.1", "taxid": 691816, "species_taxid": 691816, "relation_to_type": "type", "validated": true, "ani": 78.4142, "matched_fragments": 334, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides clarus", "strain": "strain=YIT 12056", "accession": "GCA_000195615.1", "taxid": 626929, "species_taxid": 626929, "relation_to_type": "type", "validated": true, "ani": 78.389, "matched_fragments": 284, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=DSM 20697", "accession": "GCA_000155815.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 78.3708, "matched_fragments": 269, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=NCTC11155", "accession": "GCA_900445565.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 78.3509, "matched_fragments": 270, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides clarus", "strain": "strain=YIT 12056", "accession": "GCA_900129655.1", "taxid": 626929, "species_taxid": 626929, "relation_to_type": "type", "validated": true, "ani": 78.3443, "matched_fragments": 283, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides eggerthii", "strain": "strain=DSM 20697", "accession": "GCA_025146565.1", "taxid": 28111, "species_taxid": 28111, "relation_to_type": "type", "validated": true, "ani": 78.3064, "matched_fragments": 272, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides muris", "strain": "strain=KH365_2", "accession": "GCA_024704915.1", "taxid": 2937417, "species_taxid": 2937417, "relation_to_type": "type", "validated": true, "ani": 78.3064, "matched_fragments": 315, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola plebeius", "strain": "strain=DSM 17135", "accession": "GCA_000187895.1", "taxid": 310297, "species_taxid": 310297, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2357, "matched_fragments": 165, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola faecicola", "strain": "strain=AGMB03916", "accession": "GCA_013618865.1", "taxid": 2739389, "species_taxid": 2739389, "relation_to_type": "type", "validated": true, "ani": 77.8937, "matched_fragments": 162, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caccae", "strain": "strain=ATCC 43185", "accession": "GCA_002959715.1", "taxid": 47678, "species_taxid": 47678, "relation_to_type": "suspected-type", "validated": true, "ani": 77.631, "matched_fragments": 125, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides caccae", "strain": "strain=FDAARGOS_1097", "accession": "GCA_016726305.1", "taxid": 47678, "species_taxid": 47678, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6145, "matched_fragments": 126, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phocaeicola salanitronis", "strain": "strain=DSM 18170", "accession": "GCA_000190575.1", "taxid": 376805, "species_taxid": 376805, "relation_to_type": "type", "validated": true, "ani": 77.5904, "matched_fragments": 187, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacteroides congonensis", "strain": "strain=Marseille-P3132", "accession": "GCA_900130125.1", "taxid": 1871006, "species_taxid": 1871006, "relation_to_type": "type", "validated": true, "ani": 77.3721, "matched_fragments": 156, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=JCM 13447", "accession": "GCA_000613565.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 76.3783, "matched_fragments": 80, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=DSM 16972", "accession": "GCA_000426585.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 76.338, "matched_fragments": 81, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotellamassilia timonensis", "strain": "strain=Marseille-P2831", "accession": "GCA_900106785.1", "taxid": 1852370, "species_taxid": 1852370, "relation_to_type": "type", "validated": true, "ani": 76.26, "matched_fragments": 63, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 76.2251, "matched_fragments": 80, "total_fragments": 1068, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900128475.1", "gtdb_species": "s__Bacteroides massiliensis", "ani": 97.247, "matched_fragments": 926, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.63", "min_intra_species_ani": "97.57", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_019116805.1", "gtdb_species": "s__Bacteroides merdavium", "ani": 87.0762, "matched_fragments": 620, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900130135.1", "gtdb_species": "s__Bacteroides togonis", "ani": 85.7926, "matched_fragments": 697, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.34", "min_intra_species_ani": "96.94", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.80", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900108345.1", "gtdb_species": "s__Bacteroides ndongoniae", "ani": 81.8618, "matched_fragments": 525, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_905201685.1", "gtdb_species": "s__Bacteroides sp905201685", "ani": 80.7432, "matched_fragments": 217, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900553815.1", "gtdb_species": "s__Bacteroides sp900553815", "ani": 80.0776, "matched_fragments": 352, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.73", "min_intra_species_af": "0.73", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019116285.1", "gtdb_species": "s__Bacteroides merdigallinarum", "ani": 79.5941, "matched_fragments": 316, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017471925.1", "gtdb_species": "s__Bacteroides sp017471925", "ani": 79.0598, "matched_fragments": 347, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018883785.1", "gtdb_species": "s__Bacteroides intestinipullorum", "ani": 79.0291, "matched_fragments": 295, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002160055.1", "gtdb_species": "s__Bacteroides avicola", "ani": 78.6138, "matched_fragments": 308, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "98.46", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000154525.1", "gtdb_species": "s__Bacteroides stercoris", "ani": 78.4475, "matched_fragments": 315, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.69", "num_clustered_genomes": 73, "status": "-" }, { "accession": "GCF_004342845.1", "gtdb_species": "s__Bacteroides heparinolyticus", "ani": 78.3311, "matched_fragments": 264, "total_fragments": 1068, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.64", "min_intra_species_ani": "97.08", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" } ] }