{ "type": "genome", "identifier": "GCA_938048655.1", "organism": "uncultured Odoribacter sp.", "title": "uncultured Odoribacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938048655.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14084473", "wgs_master": "CALIUV000000000.1", "refseq_category": "na", "taxid": "876416", "species_taxid": "876416", "organism_name": "uncultured Odoribacter sp.", "infraspecific_name": "", "isolate": "ERR525959_bin.7_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/11", "asm_name": "ERR525959_bin.7_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/048/655/GCA_938048655.1_ERR525959_bin.7_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-11", "dateModified": "2023-01-11", "datePublished": "2023-01-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Odoribacter sp." ], "sample_taxid": [ "876416" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "1.005 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.07, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3515614", "Number of Sequences": "143", "Longest Sequences (bp)": "117320", "N50 (bp)": "36285", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.7", "Number of CDSs": "2620", "Average Protein Length": "377.0", "Coding Ratio (%)": "84.3", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Butyricimonas faecihominis", "strain": "strain=JCM 18676", "accession": "GCA_014647335.1", "taxid": 1472416, "species_taxid": 1472416, "relation_to_type": "type", "validated": true, "ani": 77.7411, "matched_fragments": 88, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricimonas faecihominis", "strain": "strain=DSM 105721", "accession": "GCA_014196975.1", "taxid": 1472416, "species_taxid": 1472416, "relation_to_type": "type", "validated": true, "ani": 77.6354, "matched_fragments": 91, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricimonas faecihominis", "strain": "strain=CCUG 65562", "accession": "GCA_008830385.1", "taxid": 1472416, "species_taxid": 1472416, "relation_to_type": "type", "validated": true, "ani": 77.592, "matched_fragments": 90, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricimonas paravirosa", "strain": "strain=JCM 18677", "accession": "GCA_014647355.1", "taxid": 1472417, "species_taxid": 1472417, "relation_to_type": "type", "validated": true, "ani": 77.5703, "matched_fragments": 96, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Odoribacter splanchnicus", "strain": "strain=NCTC10825", "accession": "GCA_900187175.1", "taxid": 28118, "species_taxid": 28118, "relation_to_type": "type", "validated": true, "ani": 77.5647, "matched_fragments": 218, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Odoribacter splanchnicus", "strain": "strain=DSM 220712", "accession": "GCA_000190535.1", "taxid": 28118, "species_taxid": 28118, "relation_to_type": "type", "validated": true, "ani": 77.5507, "matched_fragments": 218, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Odoribacter laneus", "strain": "strain=YIT 12061", "accession": "GCA_000243215.1", "taxid": 626933, "species_taxid": 626933, "relation_to_type": "type", "validated": true, "ani": 76.8969, "matched_fragments": 107, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Culturomica massiliensis", "strain": "strain=Marseille-P2698", "accession": "GCA_900091655.1", "taxid": 1841857, "species_taxid": 1841857, "relation_to_type": "type", "validated": true, "ani": 76.8512, "matched_fragments": 162, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricimonas virosa", "strain": "strain=DSM 23226", "accession": "GCA_000519105.1", "taxid": 544645, "species_taxid": 544645, "relation_to_type": "type", "validated": true, "ani": 76.825, "matched_fragments": 72, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Butyricimonas virosa", "strain": "strain=DSM 23226", "accession": "GCA_025148635.1", "taxid": 544645, "species_taxid": 544645, "relation_to_type": "type", "validated": true, "ani": 76.8029, "matched_fragments": 71, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacteroides justesenii", "strain": "strain=OUH 308042", "accession": "GCA_000832075.1", "taxid": 1547597, "species_taxid": 1547597, "relation_to_type": "type", "validated": true, "ani": 76.403, "matched_fragments": 71, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.07, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900544025.1", "gtdb_species": "s__Odoribacter sp900544025", "ani": 100.0, "matched_fragments": 1045, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.76", "min_intra_species_ani": "97.68", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.80", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCA_900541415.1", "gtdb_species": "s__Odoribacter sp900541415", "ani": 84.4308, "matched_fragments": 862, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000190535.1", "gtdb_species": "s__Odoribacter splanchnicus", "ani": 77.5643, "matched_fragments": 217, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.34", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.73", "num_clustered_genomes": 51, "status": "-" }, { "accession": "GCA_905215395.1", "gtdb_species": "s__Odoribacter sp905215395", "ani": 77.4333, "matched_fragments": 139, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905193145.1", "gtdb_species": "s__Odoribacter sp905193145", "ani": 77.2459, "matched_fragments": 75, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900762515.1", "gtdb_species": "s__Odoribacter sp900762515", "ani": 77.2389, "matched_fragments": 156, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009935865.1", "gtdb_species": "s__Odoribacter sp009935865", "ani": 77.0802, "matched_fragments": 162, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "98.96", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900091655.1", "gtdb_species": "s__Odoribacter massiliensis", "ani": 76.8512, "matched_fragments": 162, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_905216195.1", "gtdb_species": "s__Odoribacter sp905216195", "ani": 76.7289, "matched_fragments": 128, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905204385.1", "gtdb_species": "s__Odoribacter sp905204385", "ani": 76.5633, "matched_fragments": 121, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_910578985.1", "gtdb_species": "s__Odoribacter sp910578985", "ani": 76.5504, "matched_fragments": 77, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900543425.1", "gtdb_species": "s__Gabonibacter sp900543425", "ani": 76.1646, "matched_fragments": 86, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Gabonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019114285.1", "gtdb_species": "s__Odoribacter faecigallinarum", "ani": 76.1077, "matched_fragments": 72, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinifilaceae;g__Odoribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.133, "cell_length": 0.362, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 4072859.214, "gc_content": 43.387, "coding_genes": 3542.25, "rRNA16S_genes": 4.0, "tRNA_genes": 59.667, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Marinifilaceae", "g__Odoribacter", "s__Odoribacter sp900544025" ], "_genome_taxon": [ "uncultured", "Odoribacter", "sp.", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Marinifilaceae", "g__Odoribacter", "s__Odoribacter sp900544025", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Marinifilaceae", "Odoribacter", "Odoribacter", "sp900544025" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }