{ "type": "genome", "identifier": "GCA_938048665.1", "organism": "uncultured Coprococcus sp.", "title": "uncultured Coprococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938048665.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085763", "wgs_master": "CALIUT000000000.1", "refseq_category": "na", "taxid": "458253", "species_taxid": "458253", "organism_name": "uncultured Coprococcus sp.", "infraspecific_name": "", "isolate": "SRR413754_bin.94_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/10", "asm_name": "SRR413754_bin.94_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/048/665/GCA_938048665.1_SRR413754_bin.94_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-10", "dateModified": "2023-01-10", "datePublished": "2023-01-10", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Coprococcus sp." ], "sample_taxid": [ "458253" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.700 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2474845", "Number of Sequences": "21", "Longest Sequences (bp)": "234044", "N50 (bp)": "148644", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.9", "Number of CDSs": "2132", "Average Protein Length": "340.4", "Coding Ratio (%)": "88.0", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Coprococcus eutactus", "strain": "strain=ATCC 27759", "accession": "GCA_025149915.1", "taxid": 33043, "species_taxid": 33043, "relation_to_type": "suspected-type", "validated": true, "ani": 79.6281, "matched_fragments": 220, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus eutactus", "strain": "strain=ATCC 27759", "accession": "GCA_000154425.1", "taxid": 33043, "species_taxid": 33043, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3921, "matched_fragments": 219, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wujia chipingensis", "strain": "strain=NSJ-4", "accession": "GCA_014337155.1", "taxid": 2763670, "species_taxid": 2763670, "relation_to_type": "type", "validated": true, "ani": 79.0078, "matched_fragments": 106, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lachnospira eligens", "strain": "strain=ATCC 27750", "accession": "GCA_000146185.1", "taxid": 39485, "species_taxid": 39485, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5104, "matched_fragments": 70, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eubacterium ruminantium", "strain": "strain=ATCC 17233", "accession": "GCA_900167085.1", "taxid": 42322, "species_taxid": 42322, "relation_to_type": "type", "validated": true, "ani": 77.4888, "matched_fragments": 75, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseburia inulinivorans", "strain": "strain=DSM 16841", "accession": "GCA_000174195.1", "taxid": 360807, "species_taxid": 360807, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0484, "matched_fragments": 50, "total_fragments": 816, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003482105.1", "gtdb_species": "s__Coprococcus sp000433075", "ani": 98.0874, "matched_fragments": 734, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_001404675.1", "gtdb_species": "s__Coprococcus eutactus_A", "ani": 79.7704, "matched_fragments": 229, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.53", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 34, "status": "-" }, { "accession": "GCF_000154245.1", "gtdb_species": "s__Coprococcus sp000154245", "ani": 79.7438, "matched_fragments": 192, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_003461625.1", "gtdb_species": "s__Coprococcus sp900066115", "ani": 79.5422, "matched_fragments": 193, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 23, "status": "-" }, { "accession": "GCF_000154425.1", "gtdb_species": "s__Coprococcus eutactus", "ani": 79.3707, "matched_fragments": 220, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_900557435.1", "gtdb_species": "s__Coprococcus sp900557435", "ani": 78.8936, "matched_fragments": 130, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900548315.1", "gtdb_species": "s__Coprococcus sp900548315", "ani": 78.8674, "matched_fragments": 157, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016297325.1", "gtdb_species": "s__Coprococcus sp016297325", "ani": 78.6592, "matched_fragments": 166, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017935345.1", "gtdb_species": "s__Coprococcus sp017935345", "ani": 78.6548, "matched_fragments": 143, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002437435.1", "gtdb_species": "s__Coprococcus sp002437435", "ani": 78.3866, "matched_fragments": 160, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016296785.1", "gtdb_species": "s__Coprococcus sp016296785", "ani": 78.2837, "matched_fragments": 144, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017624085.1", "gtdb_species": "s__Coprococcus sp017624085", "ani": 78.1175, "matched_fragments": 75, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Coprococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014287955.1", "gtdb_species": "s__Lachnospira sp900316325", "ani": 77.7376, "matched_fragments": 62, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Lachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_017420535.1", "gtdb_species": "s__Eubacterium_Q sp017420535", "ani": 77.2213, "matched_fragments": 72, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902774725.1", "gtdb_species": "s__Eubacterium_Q sp902774725", "ani": 77.1211, "matched_fragments": 58, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.31", "min_intra_species_ani": "95.93", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.75", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017938485.1", "gtdb_species": "s__CAG-127 sp017938485", "ani": 77.1203, "matched_fragments": 72, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902800325.1", "gtdb_species": "s__CAG-127 sp902800325", "ani": 76.9516, "matched_fragments": 75, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__CAG-127", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "96.92", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.82", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_002314775.1", "gtdb_species": "s__UBA1760 sp002314775", "ani": 76.414, "matched_fragments": 74, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA1760", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900321215.1", "gtdb_species": "s__Eubacterium_Q sp900321215", "ani": 76.2625, "matched_fragments": 60, "total_fragments": 816, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_Q", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.10", "min_intra_species_ani": "98.50", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.75", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.117, "cell_length": 0.204, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 5.775, "genome_size": 3287902.0, "gc_content": 42.676, "coding_genes": 2985.0, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Coprococcus", "s__Coprococcus sp000433075" ], "_genome_taxon": [ "uncultured", "Coprococcus", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Coprococcus", "s__Coprococcus sp000433075", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Coprococcus", "Coprococcus", "sp000433075" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }