<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2023-01-03T00:00:00.000" last_update="2023-04-12T11:57:29.000" submission_date="2023-01-04T08:30:52.730" id="32559928" accession="SAMEA14083312">   <Ids>     <Id db="BioSample" is_primary="1">SAMEA14083312</Id>     <Id db="SRA">ERS11686446</Id>   </Ids>   <Description>     <Title>Metagenome-assembled genome: ERR1018268_bin.70_CONCOCT_v1.1_MAG</Title>     <Organism taxonomy_id="190976" taxonomy_name="Methanobrevibacter woesei">       <OrganismName>Methanobrevibacter woesei</OrganismName>     </Organism>     <Comment>       <Paragraph>This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1018268 of study ERP012177.</Paragraph>     </Comment>   </Description>   <Owner>     <Name>EBI</Name>   </Owner>   <Models>     <Model>Generic</Model>   </Models>   <Package display_name="Generic">Generic.1.0</Package>   <Attributes>     <Attribute attribute_name="ENA-CHECKLIST">ERC000047</Attribute>     <Attribute attribute_name="ENA-FIRST-PUBLIC">2023-01-03</Attribute>     <Attribute attribute_name="ENA-LAST-UPDATE">2023-01-03</Attribute>     <Attribute attribute_name="External Id">SAMEA14083312</Attribute>     <Attribute attribute_name="INSDC center alias">EBI</Attribute>     <Attribute attribute_name="INSDC center name">European Bioinformatics Institute</Attribute>     <Attribute attribute_name="INSDC first public">2023-01-03T00:33:30Z</Attribute>     <Attribute attribute_name="INSDC last update">2023-01-03T00:33:30Z</Attribute>     <Attribute attribute_name="INSDC status">public</Attribute>     <Attribute attribute_name="Submitter Id">ERR1018268_bin.70_CONCOCT_v1.1_MAG</Attribute>     <Attribute attribute_name="assembly quality">Many fragments with little to no review of assembly other than reporting of standard assembly statistics</Attribute>     <Attribute attribute_name="assembly software">metaspadesv3.11.1</Attribute>     <Attribute attribute_name="binning parameters">Default</Attribute>     <Attribute attribute_name="binning software">CONCOCT v1.1</Attribute>     <Attribute attribute_name="broker name">EMG broker account, EMBL-EBI</Attribute>     <Attribute attribute_name="collection date" harmonized_name="collection_date" display_name="collection date">2012-01-01</Attribute>     <Attribute attribute_name="completeness score">100</Attribute>     <Attribute attribute_name="completeness software">CheckM</Attribute>     <Attribute attribute_name="contamination score">0.0</Attribute>     <Attribute attribute_name="environment (biome)" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">Host-associated</Attribute>     <Attribute attribute_name="environment (feature)" harmonized_name="env_local_scale" display_name="local-scale environmental context">Human</Attribute>     <Attribute attribute_name="environment (material)" harmonized_name="env_medium" display_name="environmental medium">Digestive system</Attribute>     <Attribute attribute_name="geographic location (country and/or sea)" harmonized_name="geo_loc_name" display_name="geographic location">China</Attribute>     <Attribute attribute_name="geographic location (latitude)">55.676098</Attribute>     <Attribute attribute_name="geographic location (longitude)">12.568337</Attribute>     <Attribute attribute_name="investigation type" harmonized_name="investigation_type" display_name="investigation type">metagenome-assembled genome</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">human gut metagenome</Attribute>     <Attribute attribute_name="metagenomic source">human gut metagenome</Attribute>     <Attribute attribute_name="project name" harmonized_name="project_name" display_name="project name">We performed a metagenome-wide association study on fecal samples from 74 CRC patients and 54 controls from China and validated the results in 16 patients and 24 controls from Denmark. We further validated the biomarkers in two published cohorts from France and Austria. Finally, we employed targeted quantitative PCR (qPCR) assays to evaluate the diagnostic potential of selected biomarkers in an independent Chinese cohort of 47 patients and 109 controls.</Attribute>     <Attribute attribute_name="sample derived from">SAMEA3541552</Attribute>     <Attribute attribute_name="sample name" harmonized_name="sample_name" display_name="sample name">ERR1018268_bin.70_CONCOCT_v1.1_MAG</Attribute>     <Attribute attribute_name="scientific_name">Methanobrevibacter woesei</Attribute>     <Attribute attribute_name="sequencing method">Illumina HiSeq 2000</Attribute>     <Attribute attribute_name="taxonomic identity marker">multi-marker approach</Attribute>   </Attributes>   <Status status="live" when="2023-01-05T08:28:54.700"/> </BioSample> </BioSampleSet>
