{ "type": "genome", "identifier": "GCA_938048815.1", "organism": "uncultured Aquificaceae bacterium", "title": "uncultured Aquificaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938048815.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14074147", "wgs_master": "CALIUI000000000.1", "refseq_category": "na", "taxid": "374108", "species_taxid": "374108", "organism_name": "uncultured Aquificaceae bacterium", "infraspecific_name": "", "isolate": "S1_Bin_MAXBIN__048_sub_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/25", "asm_name": "S1_Bin_MAXBIN__048_sub_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/048/815/GCA_938048815.1_S1_Bin_MAXBIN_048_sub_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-25", "dateModified": "2023-01-25", "datePublished": "2023-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Aquificaceae bacterium" ], "sample_taxid": [ "374108" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.447 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.37, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1594706", "Number of Sequences": "133", "Longest Sequences (bp)": "61465", "N50 (bp)": "17802", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.4", "Number of CDSs": "1599", "Average Protein Length": "286.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.37, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_011006175.1", "gtdb_species": "s__UBA11096 sp011006175", "ani": 78.3892, "matched_fragments": 158, "total_fragments": 460, "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__UBA11096", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011054805.1", "gtdb_species": "s__UBA11096 sp011054805", "ani": 77.9811, "matched_fragments": 202, "total_fragments": 460, "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__UBA11096", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.69", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018771605.1", "gtdb_species": "s__UBA11096 sp003534055", "ani": 77.9584, "matched_fragments": 206, "total_fragments": 460, "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__UBA11096", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003696155.1", "gtdb_species": "s__UBA11096 sp003696155", "ani": 76.9271, "matched_fragments": 81, "total_fragments": 460, "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__UBA11096", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011375435.1", "gtdb_species": "s__Thermocrinis ruber_A", "ani": 76.1313, "matched_fragments": 65, "total_fragments": 460, "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Thermocrinis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.268, "cell_length": 0.295, "doubling_h": 0.044, "growth_tmp": 75.83, "optimum_tmp": 73.916, "optimum_ph": 6.716, "genome_size": 1548870.869, "gc_content": 46.05, "coding_genes": 1592.166, "rRNA16S_genes": 2.666, "tRNA_genes": 43.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.142, "aerobic_respiration": 0.857, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Aquificota", "c__Aquificae", "o__Aquificales", "f__Aquificaceae", "g__UBA11096", "s__UBA11096 sp938048815" ], "_genome_taxon": [ "uncultured", "Aquificaceae", "bacterium", "d__Bacteria", "p__Aquificota", "c__Aquificae", "o__Aquificales", "f__Aquificaceae", "g__UBA11096", "s__UBA11096 sp938048815", "Bacteria", "Aquificota", "Aquificae", "Aquificales", "Aquificaceae", "UBA11096", "UBA11096", "sp938048815" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }