{ "type": "genome", "identifier": "GCA_938049295.1", "organism": "uncultured Coriobacteriaceae bacterium", "title": "uncultured Coriobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "European Bioinformatics Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938049295.1", "bioproject": "PRJEB51075", "biosample": "SAMEA14085052", "wgs_master": "CALICB000000000.1", "refseq_category": "na", "taxid": "331632", "species_taxid": "331632", "organism_name": "uncultured Coriobacteriaceae bacterium", "infraspecific_name": "", "isolate": "ERR688564_bin.7_CONCOCT_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ERR688564_bin.7_CONCOCT_v1.1_MAG", "submitter": "European Bioinformatics Institute", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/049/295/GCA_938049295.1_ERR688564_bin.7_CONCOCT_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Coriobacteriaceae bacterium" ], "sample_taxid": [ "331632" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "0.478 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.39, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1724279", "Number of Sequences": "62", "Longest Sequences (bp)": "133808", "N50 (bp)": "50623", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "1453", "Average Protein Length": "335.5", "Coding Ratio (%)": "84.8", "Number of rRNAs": "0", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parolsenella catena", "strain": "strain=JCM 31932", "accession": "GCA_003966955.1", "taxid": 2003188, "species_taxid": 2003188, "relation_to_type": "type", "validated": true, "ani": 98.2595, "matched_fragments": 501, "total_fragments": 544, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Parolsenella massiliensis", "strain": "strain=Marseille-P3237", "accession": "GCA_900143685.1", "taxid": 1871022, "species_taxid": 1871022, "relation_to_type": "type", "validated": true, "ani": 89.2207, "matched_fragments": 471, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter provencensis", "strain": "strain=Marseille-P2912", "accession": "GCA_900128445.1", "taxid": 1852386, "species_taxid": 1852386, "relation_to_type": "type", "validated": true, "ani": 79.7175, "matched_fragments": 242, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 79.4762, "matched_fragments": 250, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma timonensis", "strain": "strain=GD5", "accession": "GCA_000321165.1", "taxid": 1232436, "species_taxid": 1232436, "relation_to_type": "type", "validated": true, "ani": 78.9992, "matched_fragments": 200, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, "ani": 78.9486, "matched_fragments": 182, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 78.9408, "matched_fragments": 208, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella aerofaciens", "strain": "strain=ATCC 25986", "accession": "GCA_000169035.1", "taxid": 74426, "species_taxid": 74426, "relation_to_type": "type", "validated": true, "ani": 78.6926, "matched_fragments": 176, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_001437585.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6891, "matched_fragments": 163, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella uli", "strain": "strain=DSM 7084", "accession": "GCA_000143845.1", "taxid": 133926, "species_taxid": 133926, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6835, "matched_fragments": 163, "total_fragments": 544, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.39, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003966955.1", "gtdb_species": "s__Parolsenella catena", "ani": 98.2595, "matched_fragments": 501, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Parolsenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "97.75", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_900143685.1", "gtdb_species": "s__Parolsenella massiliensis", "ani": 89.2207, "matched_fragments": 471, "total_fragments": 544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Parolsenella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.67", "min_intra_species_ani": "96.67", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900543875.1", "gtdb_species": "s__Parolsenella sp900543875", "ani": 86.2151, "matched_fragments": 393, "total_fragments": 544, "gtdb_taxonomy": 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