{ "type": "genome", "identifier": "GCA_938084095.1", "organism": "uncultured Flavobacteriales bacterium", "title": "uncultured Flavobacteriales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938084095.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14074414", "wgs_master": "CALKDN000000000.1", "refseq_category": "na", "taxid": "213322", "species_taxid": "213322", "organism_name": "uncultured Flavobacteriales bacterium", "infraspecific_name": "", "isolate": "S3_Bin_METABAT__186_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/25", "asm_name": "S3_Bin_METABAT__186_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/084/095/GCA_938084095.1_S3_Bin_METABAT_186_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-25", "dateModified": "2023-01-25", "datePublished": "2023-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Flavobacteriales bacterium" ], "sample_taxid": [ "213322" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.547 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.65, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1920360", "Number of Sequences": "161", "Longest Sequences (bp)": "57326", "N50 (bp)": "17754", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.9", "Number of CDSs": "1526", "Average Protein Length": "342.9", "Coding Ratio (%)": "81.7", "Number of rRNAs": "0", "Number of tRNAs": "24", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 85.65, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018665005.1", "gtdb_species": "s__UBA952 sp018665005", "ani": 98.5107, "matched_fragments": 423, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA952", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.77", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_905480165.1", "gtdb_species": "s__UBA952 sp905480165", "ani": 93.3253, "matched_fragments": 411, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA952", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011522905.1", "gtdb_species": "s__UBA952 sp011522905", "ani": 78.439, "matched_fragments": 176, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA952", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003331365.1", "gtdb_species": "s__UBA952 sp003331365", "ani": 78.0606, "matched_fragments": 180, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA952", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905182495.1", "gtdb_species": "s__UBA952 sp905182495", "ani": 77.0443, "matched_fragments": 79, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA952", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002167775.1", "gtdb_species": "s__UBA952 sp002167775", "ani": 76.8865, "matched_fragments": 92, "total_fragments": 561, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Crocinitomicaceae;g__UBA952", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.337, "cell_length": 0.308, "doubling_h": 1.285, "growth_tmp": 26.455, "optimum_tmp": 26.685, "optimum_ph": 7.271, "genome_size": 3861663.667, "gc_content": 35.517, "coding_genes": 2961.142, "rRNA16S_genes": 3.684, "tRNA_genes": 48.763, "gram_stain": 0.0, "sporulation": 0.007, "motility": 0.372, "range_salinity": 0.615, "facultative_respiration": 0.042, "anaerobic_respiration": 0.012, "aerobic_respiration": 0.945, "mesophilic_range_tmp": 0.898, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.101, "bacillus_cell_shape": 0.982, "coccus_cell_shape": 0.005, "filament_cell_shape": 0.002, "coccobacillus_cell_shape": 0.01, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Crocinitomicaceae", "g__UBA952", "s__UBA952 sp018665005" ], "_genome_taxon": [ "uncultured", "Flavobacteriales", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Crocinitomicaceae", "g__UBA952", "s__UBA952 sp018665005", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Crocinitomicaceae", "UBA952", "UBA952", "sp018665005" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }