{ "type": "genome", "identifier": "GCA_938085015.1", "organism": "uncultured Flavobacteriaceae bacterium", "title": "uncultured Flavobacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938085015.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14074541", "wgs_master": "CALKGA000000000.1", "refseq_category": "na", "taxid": "165436", "species_taxid": "165436", "organism_name": "uncultured Flavobacteriaceae bacterium", "infraspecific_name": "", "isolate": "S4_Bin_METABAT__36_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/25", "asm_name": "S4_Bin_METABAT__36_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/085/015/GCA_938085015.1_S4_Bin_METABAT_36_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-25", "dateModified": "2023-01-25", "datePublished": "2023-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Flavobacteriaceae bacterium" ], "sample_taxid": [ "165436" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.523 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1832582", "Number of Sequences": "74", "Longest Sequences (bp)": "212375", "N50 (bp)": "35456", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.5", "Number of CDSs": "1615", "Average Protein Length": "331.9", "Coding Ratio (%)": "87.7", "Number of rRNAs": "0", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=SW033", "accession": "GCA_004310335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 76.739, "matched_fragments": 53, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 76.713, "matched_fragments": 59, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=CGMCC 1.11009", "accession": "GCA_014636335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 76.6766, "matched_fragments": 52, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia argentinensis", "strain": "strain=JUB59", "accession": "GCA_000224335.2", "taxid": 456455, "species_taxid": 456455, "relation_to_type": "type", "validated": true, "ani": 76.6439, "matched_fragments": 55, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.6416, "matched_fragments": 66, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens luteolus", "strain": "strain=XSD401", "accession": "GCA_021032705.1", "taxid": 2855840, "species_taxid": 2855840, "relation_to_type": "type", "validated": true, "ani": 76.631, "matched_fragments": 51, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 76.603, "matched_fragments": 63, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola aphaedonensis", "strain": "strain=CECT 8487", "accession": "GCA_003386195.1", "taxid": 1461338, "species_taxid": 1461338, "relation_to_type": "type", "validated": true, "ani": 76.5938, "matched_fragments": 56, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 76.5845, "matched_fragments": 53, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Snuella sedimenti", "strain": "strain=CAU 1569", "accession": "GCA_016428595.1", "taxid": 2798802, "species_taxid": 2798802, "relation_to_type": "type", "validated": true, "ani": 76.5807, "matched_fragments": 52, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 76.5796, "matched_fragments": 66, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.5075, "matched_fragments": 54, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola marinus", "strain": "strain=B011", "accession": "GCA_008085455.1", "taxid": 1912246, "species_taxid": 1912246, "relation_to_type": "type", "validated": true, "ani": 76.4728, "matched_fragments": 58, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana nanhaiensis", "strain": "strain=FHC16", "accession": "GCA_000943555.1", "taxid": 1382798, "species_taxid": 1382798, "relation_to_type": "type", "validated": true, "ani": 76.4436, "matched_fragments": 50, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomarina gelatinilytica", "strain": "strain=AK20", "accession": "GCA_000348685.1", "taxid": 1137281, "species_taxid": 1137281, "relation_to_type": "type", "validated": true, "ani": 76.4098, "matched_fragments": 51, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella vidalii", "strain": "strain=HL634", "accession": "GCA_013403955.1", "taxid": 2615024, "species_taxid": 2615024, "relation_to_type": "type", "validated": true, "ani": 76.3661, "matched_fragments": 69, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.2903, "matched_fragments": 55, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.2903, "matched_fragments": 55, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kordia algicida", "strain": "strain=OT-1", "accession": "GCA_000154725.1", "taxid": 221066, "species_taxid": 221066, "relation_to_type": "type", "validated": true, "ani": 76.0666, "matched_fragments": 54, "total_fragments": 572, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001735715.1", "gtdb_species": "s__GCA001735715 sp001735715", "ani": 98.3435, "matched_fragments": 525, "total_fragments": 572, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__GCA001735715", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.19", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": 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