{ "type": "genome", "identifier": "GCA_938085495.1", "organism": "uncultured Thermus sp.", "title": "uncultured Thermus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "marine college, shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_938085495.1", "bioproject": "PRJEB50838", "biosample": "SAMEA14074139", "wgs_master": "CALKGP000000000.1", "refseq_category": "na", "taxid": "157149", "species_taxid": "157149", "organism_name": "uncultured Thermus sp.", "infraspecific_name": "", "isolate": "S1_Bin_MAXBIN__001_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/25", "asm_name": "S1_Bin_MAXBIN__001_1", "submitter": "marine college, shandong university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/938/085/495/GCA_938085495.1_S1_Bin_MAXBIN_001_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-25", "dateModified": "2023-01-25", "datePublished": "2023-01-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Thermus sp." ], "sample_taxid": [ "157149" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.494 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1802017", "Number of Sequences": "247", "Longest Sequences (bp)": "28422", "N50 (bp)": "8632", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "1656", "Average Protein Length": "293.1", "Coding Ratio (%)": "80.8", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermus caldifontis", "strain": "strain=YIM 73026", "accession": "GCA_003336745.1", "taxid": 1930763, "species_taxid": 1930763, "relation_to_type": "type", "validated": true, "ani": 93.1795, "matched_fragments": 424, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus amyloliquefaciens", "strain": "strain=YIM 77409", "accession": "GCA_000744885.1", "taxid": 1449080, "species_taxid": 1449080, "relation_to_type": "type", "validated": true, "ani": 88.2051, "matched_fragments": 410, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus brevis", "strain": "strain=SYSU G05001", "accession": "GCA_019430925.1", "taxid": 2862456, "species_taxid": 2862456, "relation_to_type": "type", "validated": true, "ani": 87.4836, "matched_fragments": 425, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus tenuipuniceus", "strain": "strain=YIM 76954", "accession": "GCA_002964845.1", "taxid": 2078690, "species_taxid": 2078690, "relation_to_type": "type", "validated": true, "ani": 87.4565, "matched_fragments": 416, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus scotoductus", "strain": "strain=DSM 8553", "accession": "GCA_000381045.1", "taxid": 37636, "species_taxid": 37636, "relation_to_type": "suspected-type", "validated": true, "ani": 87.4016, "matched_fragments": 380, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus antranikianii", "strain": "strain=DSM 12462", "accession": "GCA_000423905.1", "taxid": 88190, "species_taxid": 88190, "relation_to_type": "type", "validated": true, "ani": 87.0683, "matched_fragments": 414, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus caldilimi", "strain": "strain=YIM 78456", "accession": "GCA_004684245.1", "taxid": 2483360, "species_taxid": 2483360, "relation_to_type": "type", "validated": true, "ani": 86.7641, "matched_fragments": 422, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermus tengchongensis", "strain": "strain=YIM 77924", "accession": "GCA_021462405.1", "taxid": 1214928, "species_taxid": 1214928, "relation_to_type": "type", "validated": true, "ani": 86.4906, "matched_fragments": 418, "total_fragments": 482, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003336745.1", "gtdb_species": "s__Thermus caldifontis", "ani": 93.1352, "matched_fragments": 425, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000744885.1", "gtdb_species": "s__Thermus amyloliquefaciens", "ani": 88.1908, "matched_fragments": 412, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002964845.1", 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414, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000744175.1", "gtdb_species": "s__Thermus tengchongensis", "ani": 86.9662, "matched_fragments": 436, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004684245.1", "gtdb_species": "s__Thermus caldilimi", "ani": 86.7641, "matched_fragments": 422, "total_fragments": 482, "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Thermaceae;g__Thermus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.312, "cell_length": 0.398, "doubling_h": -0.009, "growth_tmp": 65.713, "optimum_tmp": 68.361, "optimum_ph": 7.38, "genome_size": 2282082.599, "gc_content": 67.776, "coding_genes": 2233.787, "rRNA16S_genes": 1.833, "tRNA_genes": 48.633, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.222, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.777, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.909, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.09, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 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