{
    "type": "genome",
    "identifier": "GCA_943841565.1",
    "organism": "uncultured Porticoccus sp.",
    "title": "uncultured Porticoccus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Max Planck Institute for Marine Microbiology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_943841565.1",
        "bioproject": "PRJEB52999",
        "biosample": "SAMEA110068947",
        "wgs_master": "CALSYT000000000.1",
        "refseq_category": "na",
        "taxid": "1256050",
        "species_taxid": "1256050",
        "organism_name": "uncultured Porticoccus sp.",
        "infraspecific_name": "",
        "isolate": "PACB-20200310-m62",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/27",
        "asm_name": "20200310_METABAT__160_1-contigs.fa",
        "submitter": "Max Planck Institute for Marine Microbiology",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/841/565/GCA_943841565.1_20200310_METABAT_160_1-contigs.fa",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-27",
    "dateModified": "2022-11-27",
    "datePublished": "2022-11-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Porticoccus sp."
        ],
        "sample_taxid": [
            "1256050"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "North Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.326 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1145457",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "309927",
        "N50 (bp)": "167251",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "1115",
        "Average Protein Length": "309.8",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002390525.1",
                "gtdb_species": "s__Porticoccus sp002390525",
                "ani": 96.4335,
                "matched_fragments": 323,
                "total_fragments": 377,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "98.80",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002685455.1",
                "gtdb_species": "s__Porticoccus sp002685455",
                "ani": 81.1024,
                "matched_fragments": 210,
                "total_fragments": 377,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905181945.1",
                "gtdb_species": "s__Porticoccus sp905181945",
                "ani": 77.7218,
                "matched_fragments": 83,
                "total_fragments": 377,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Porticoccaceae;g__Porticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "98.63",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.31,
        "cell_length": -0.31,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 22.5,
        "optimum_ph": 7.5,
        "genome_size": 2474654.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.5,
        "coccus_cell_shape": 0.5,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Porticoccaceae",
        "g__Porticoccus",
        "s__Porticoccus sp002390525"
    ],
    "_genome_taxon": [
        "uncultured",
        "Porticoccus",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Porticoccaceae",
        "g__Porticoccus",
        "s__Porticoccus sp002390525",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Porticoccaceae",
        "Porticoccus",
        "Porticoccus",
        "sp002390525"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}