{ "type": "genome", "identifier": "GCA_943841665.1", "organism": "uncultured Roseivirga sp.", "title": "uncultured Roseivirga sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Max Planck Institute for Marine Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCA_943841665.1", "bioproject": "PRJEB52999", "biosample": "SAMEA110068873", "wgs_master": "CALSZJ000000000.1", "refseq_category": "na", "taxid": "543088", "species_taxid": "543088", "organism_name": "uncultured Roseivirga sp.", "infraspecific_name": "", "isolate": "ILMN-20200310-m4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/27", "asm_name": "20200310_Bin_Bin_24_1-contigs.fa", "submitter": "Max Planck Institute for Marine Microbiology", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/943/841/665/GCA_943841665.1_20200310_Bin_Bin_24_1-contigs.fa", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-27", "dateModified": "2022-11-27", "datePublished": "2022-11-27", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Roseivirga sp." ], "sample_taxid": [ "543088" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "North Sea" ], "sample_host_location_id": [], "data_size": "0.652 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 2.03, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2249360", "Number of Sequences": "281", "Longest Sequences (bp)": "27559", "N50 (bp)": "10187", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.6", "Number of CDSs": "1914", "Average Protein Length": "301.1", "Coding Ratio (%)": "76.9", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseivirga misakiensis", "strain": "strain=SK-8", "accession": "GCA_001747105.1", "taxid": 1563681, "species_taxid": 1563681, "relation_to_type": "type", "validated": true, "ani": 78.0008, "matched_fragments": 142, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivirga spongicola", "strain": "strain=UST030701-084", "accession": "GCA_001592965.1", "taxid": 333140, "species_taxid": 333140, "relation_to_type": "type", "validated": true, "ani": 77.2299, "matched_fragments": 80, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivirga pacifica", "strain": "strain=DSM 100771", "accession": "GCA_003633845.1", "taxid": 1267423, "species_taxid": 1267423, "relation_to_type": "type", "validated": true, "ani": 77.1714, "matched_fragments": 73, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivirga pacifica", "strain": "strain=CGMCC 1.12402", "accession": "GCA_900111145.1", "taxid": 1267423, "species_taxid": 1267423, "relation_to_type": "type", "validated": true, "ani": 77.1649, "matched_fragments": 74, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivirga seohaensis", "strain": "strain=SW-152", "accession": "GCA_001592945.1", "taxid": 1914963, "species_taxid": 1914963, "relation_to_type": "type", "validated": true, "ani": 77.0773, "matched_fragments": 58, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivirga echinicomitans", "strain": "strain=KMM 6058", "accession": "GCA_001592935.1", "taxid": 296218, "species_taxid": 296218, "relation_to_type": "type", "validated": true, "ani": 76.975, "matched_fragments": 64, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivirga ehrenbergii", "strain": "strain=KMM 6017", "accession": "GCA_001593005.1", "taxid": 279360, "species_taxid": 279360, "relation_to_type": "type", "validated": true, "ani": 76.9675, "matched_fragments": 63, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivirga seohaensis subsp. aquiponti", "strain": "strain=D-25", "accession": "GCA_001267955.1", "taxid": 1566026, "species_taxid": 1914963, "relation_to_type": "type", "validated": true, "ani": 76.9374, "matched_fragments": 67, "total_fragments": 604, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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echinicomitans", "ani": 76.975, "matched_fragments": 64, "total_fragments": 604, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Roseivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.408, "cell_length": 0.348, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 23.5, "optimum_ph": null, "genome_size": 4283322.833, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.5, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 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